Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13620 569 / 0 Amino acid permease family protein (.1) AT3G19553 344 / 7e-114 Amino acid permease family protein (.1) AT1G31830 316 / 5e-103 Amino acid permease family protein (.1.2) AT5G05630 313 / 5e-102 Amino acid permease family protein (.1) AT1G31820 299 / 2e-96 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010512 [exp] 824 / 0 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10039180 [exp] 582 / 0 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 332 / 6e-109 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 330 / 3e-105 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 315 / 1e-102 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 314 / 4e-102 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10003232 [exp] 309 / 3e-100 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10020320 [exp] 44 / 0.0002 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 44 / 0.0002 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007300 [exp] 597 / 0 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G007200 [exp] 519 / 0 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G296100 [exp] 325 / 3e-106 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 320 / 2e-104 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.003G103600 [exp] 314 / 5e-102 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.004G178000 [exp] 310 / 5e-101 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.013G065000 [exp] 43 / 0.0005 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10034046 pacid=23154868 polypeptide=Lus10034046 locus=Lus10034046.g ID=Lus10034046.BGIv1.0 annot-version=v1.0 ATGATAGACGAAGAACAAGCCGTCGGAGTAGTACCTCCAGCAGCAGCAGCAGGAGCCGTTTCACAACAGAGTTGTTCTCCACTCGACGATTCCTTGAAAC CCAGAAAGCTAATCACTCTAGTCCCTCTCATCTTCCTAATCTATTTCGAAGTCGCGGGTGGTCCCTACGGCGAGGAACCGGCCGTCCAAGCCGCCGGCCC TCTCTTCGCTCTTTTGGGGTTTCTTGTCTTCCCATTCATATGGAGCGTCCCGGAGGCTCTCATCACCGCCGAGCTCTCAACAGCCTTCCCCGGAAACGGC GGCTTCGTGATCTGGGCCCAGCGCGCATTCGGACCCTTTTTCGGATCCCTGATGGGCTCCTGGAAATTCCTGAGCGGGGTAATCAACGTCGCTGCTTTCC CAGTCCTCTGCATCGATTACATGGAGAAGATCTTCCCTGCCTTGGAATCAGGTTGGCCACGTACTGTCGCGATTATCGTCGCTATCATTGTTCTGTCGTT TATCAACTATTTGGGATTGAACATTGTTGGTTATGCCGCTGTGGGACTCGGAATTGTTTCGCTTTCCCCCTTTATACTGATGACATTGATCGCAATCCCT AAAATCCGACCCCATAGATGGCTGAGTAAGGGGTCGCCAGGGGTGAAGAAAGATTGGAATCTGTTCTTGAACACATTGTTCTGGAACTTGAACTTCTGGG ACAATATCAGTACATTAGCTGGGGAAGTTGACAAGCCTGGGAAAACTTTCCCCGTTGCTCTTCCAGTGGCAGTGATCATAACTTGTCTATCTTATTTAAT CCCTCTTATGGCCGTGATCGGAGCTGTCGACGTGAATCAGACAGAATGGGGGTCAGGGTTTCACGCCACTGCTGCAGAGTTGATAGCTGGGAAATGGCTC AAGATATGGCTCGAAATAGGTGCAATGCTGTCAGCAATCGGTCTATTCGAGGCTCAGCTGAGTAGCTGCTCGTTCCAGATTCTGGGGATGGCTGAGTTGG GGATTCTCCCCAAATTCTTCGCGGTGAGGTCGAAATGGTTCCACACTCCGTGGCTGGGGATCCTTGTTCCGGCTGTGATGACTCTAGGGGTGTCGTTCTT GCAGTTTACGGATATAATATCGTCGGCCAACTTCATCTACAGCTTGAGCATGCTGCTTGAGTTTGCATCTTTCTTGTGGTTGAGGCGGAAGATGCCGAAG CTCGAGAGGCCGTACAGGATCCCTATGAGGCTTCCCATGCTGTGTTTTCTAAGCTTGATTCCTTGTGCCTTCTTGGTGTTGTTGCTAGCTACTGCTACCA AGATTGTGTACCTGATTAGTGGGGCCATGACTGGTGGTTCCATTCTGTGGTTTCTTATGATGAGCTTTTGCAGGAAGAAGAACTGCTGCACTTTCAGCAT CGATCTTGGACATCAGCCTGATTCCTGA
AA sequence Show only first row Show all	>Lus10034046 pacid=23154868 polypeptide=Lus10034046 locus=Lus10034046.g ID=Lus10034046.BGIv1.0 annot-version=v1.0 MIDEEQAVGVVPPAAAAGAVSQQSCSPLDDSLKPRKLITLVPLIFLIYFEVAGGPYGEEPAVQAAGPLFALLGFLVFPFIWSVPEALITAELSTAFPGNG GFVIWAQRAFGPFFGSLMGSWKFLSGVINVAAFPVLCIDYMEKIFPALESGWPRTVAIIVAIIVLSFINYLGLNIVGYAAVGLGIVSLSPFILMTLIAIP KIRPHRWLSKGSPGVKKDWNLFLNTLFWNLNFWDNISTLAGEVDKPGKTFPVALPVAVIITCLSYLIPLMAVIGAVDVNQTEWGSGFHATAAELIAGKWL KIWLEIGAMLSAIGLFEAQLSSCSFQILGMAELGILPKFFAVRSKWFHTPWLGILVPAVMTLGVSFLQFTDIISSANFIYSLSMLLEFASFLWLRRKMPK LERPYRIPMRLPMLCFLSLIPCAFLVLLLATATKIVYLISGAMTGGSILWFLMMSFCRKKNCCTFSIDLGHQPDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	0	1
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	1.0	0.9264
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	3.5	0.8605
AT1G76660			unknown protein		Lus10025171 [exp]	5.9	0.8689
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10023439 [exp]	6.6	0.8472
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10002148 [exp]	6.9	0.8751
AT5G38060			unknown protein		Lus10004070 [exp]	7.0	0.8602
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	7.7	0.8469
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	8.1	0.8414
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10009820 [exp]	10.2	0.8115
AT4G17960			unknown protein		Lus10030960 [exp]	12.0	0.8216

Compare expression of checked genes

Lus10034046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.