Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80510 555 / 0 Transmembrane amino acid transporter family protein (.1) AT3G30390 275 / 3e-87 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 275 / 3e-87 Transmembrane amino acid transporter family protein (.1) AT3G56200 219 / 7e-66 Transmembrane amino acid transporter family protein (.1) AT2G40420 207 / 3e-61 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003054 [exp] 784 / 0 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10007716 [exp] 293 / 3e-94 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 285 / 4e-91 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 283 / 5e-90 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 281 / 4e-89 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10034353 [exp] 280 / 5e-89 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 275 / 3e-87 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 264 / 3e-83 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10042864 [exp] 241 / 4e-74 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G011900 [exp] 582 / 0 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 573 / 0 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.017G106300 [exp] 284 / 8e-91 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 281 / 2e-89 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 271 / 2e-85 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 247 / 2e-76 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 98 / 2e-22 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 59 / 4e-10 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10034093 pacid=23154795 polypeptide=Lus10034093 locus=Lus10034093.g ID=Lus10034093.BGIv1.0 annot-version=v1.0 ATGGAGGAGACCAGGTACACAGCCGTCCCCAAGAGTTCCTACGTAGAATTGCAGTTGCACAACGACTCCGAAAATCCAGTTTCCTCCCGCAAACCCCACT CCAGATCCCTCGCCTACGAAGATTTGCACAACCCTCCCGAAAATAGAAATGCCGCCGTCGCCGACGACGACGACGACGATCTCGATATCGACGATTTACA ATTCTCCCTCTCCAAACCCGGAACCGGCTCCGGAATCTACGGCGCGGTGTTCAACCTCACCACATCCATCATCGGCGCGGGGATCATGGCATTGCCCGCT ACGATGAAGGTTCTCGGATTGCCGATAGGGGTCGTGCTCATACTCCTCATGGGGCTTTTATCTGAGGTTAGCGTTGAGCTTTTAATTAGGTTTTCGGTTC TTTGCAAGGCTTCGTCGTATGGCGAAGTTGTGGAGTGTGCTCTAGGGAGGACGGCCAAGGTATTGTCTGAGATTTGCATCATTGTGAACAATGCTGGGGT TTTGGTTGTATATTTGATCATTATTGGGGATGTTATGTCTGGATCTCCTCATCATGTTGGTGTTTTCGATCAATGGCTTGGAAATGGTGTTTGGGATCAT AGGAGATTGGTGATTCTCATTGTGTTAGTGCTTCTTCTTGCACCTCTATGCACTTTGGATCGGATCGATTCCTTGAGCTTGACCTCAGCTGCCTCTGTTG CATTAGCCATTGTCTTCGTAGTCGTTTGCTTCACCGTTGCATTCGTCAAGTTGGTCGAAGGAAAGATCGAACCGCCAAGGATGAGCCCTGATTTCAATTC AGAGAAGGCCATTTTGGATTTGCTTGTGGTGATTCCTATTATGGCAAATGCATACGTTTGTCACTTCAATGTCCAGCCGATTTACAACGAGCTCGAAGGA CGAACCCCTCAGAAAATGTTTAAGGTCGGGAGGATCACAACCGCTCTCTGCGTTGCCGTATATGCTTGCACTGCAATATCGGGATACTTGCTTTTCGGGT CAGGAACCGAAGCTGATATCCTCACGAATTTCGACGAAGACCTCGGGGTTCCTTTCAGCACTGCTTTAGATTACATAGTTAGAGTCGGCTACGTTCTGCA TTTAGTTCTCGTTTTCCCTGTTCTTCATTTCTCATTGAGACAAGTCGTGAACGATCTGATCTTCGAAAGATCGGCTCCGTTGACAGAGAGCAGGAAGAGG TGCTTGGCATTGACAGCAGTTCTGCTCGGTCTGATTTACTTCGGTTCGACTATGATTCCAAACATTTGGACTGCTTTCAAGTTTACAGGAGCAACAACGG CTGTGTCTTTGGGTTTCACATTTCCATCTCTCATTGCTTTGAGGCTCGGCCAACGAGGAGACGGGTTGAGCGTGAAGGAGAAGTTTTTGTCGTGGTTGAT GCTGGTTCTTGCTGTGATAGTTAGCGTAGCGGGAGTGATTGGAAACGTGTACAGCCTGAGAAGCCACTCAGATTGA
AA sequence Show only first row Show all	>Lus10034093 pacid=23154795 polypeptide=Lus10034093 locus=Lus10034093.g ID=Lus10034093.BGIv1.0 annot-version=v1.0 MEETRYTAVPKSSYVELQLHNDSENPVSSRKPHSRSLAYEDLHNPPENRNAAVADDDDDDLDIDDLQFSLSKPGTGSGIYGAVFNLTTSIIGAGIMALPA TMKVLGLPIGVVLILLMGLLSEVSVELLIRFSVLCKASSYGEVVECALGRTAKVLSEICIIVNNAGVLVVYLIIIGDVMSGSPHHVGVFDQWLGNGVWDH RRLVILIVLVLLLAPLCTLDRIDSLSLTSAASVALAIVFVVVCFTVAFVKLVEGKIEPPRMSPDFNSEKAILDLLVVIPIMANAYVCHFNVQPIYNELEG RTPQKMFKVGRITTALCVAVYACTAISGYLLFGSGTEADILTNFDEDLGVPFSTALDYIVRVGYVLHLVLVFPVLHFSLRQVVNDLIFERSAPLTESRKR CLALTAVLLGLIYFGSTMIPNIWTAFKFTGATTAVSLGFTFPSLIALRLGQRGDGLSVKEKFLSWLMLVLAVIVSVAGVIGNVYSLRSHSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80510			Transmembrane amino acid trans...		Lus10034093 [exp]	0	1
AT1G62020			Coatomer, alpha subunit (.1)		Lus10016481 [exp]	1.7	0.9405
AT4G01400			unknown protein		Lus10030195 [exp]	2.4	0.9328
AT5G19760			Mitochondrial substrate carrie...		Lus10030361 [exp]	3.3	0.8998
AT2G47650		UXS4	UDP-xylose synthase 4 (.1.2)		Lus10008217 [exp]	4.0	0.9074
AT4G01400			unknown protein		Lus10002677 [exp]	4.5	0.9197
AT1G62020			Coatomer, alpha subunit (.1)		Lus10037539 [exp]	4.9	0.9207
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	5.5	0.9192
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	6.5	0.9168
AT1G62020			Coatomer, alpha subunit (.1)		Lus10040752 [exp]	9.5	0.9169
AT4G17180			O-Glycosyl hydrolases family 1...		Lus10039095 [exp]	10.0	0.9008

Compare expression of checked genes

Lus10034093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.