Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02450 713 / 0 cell division protein ftsH, putative (.1) AT2G30950 293 / 3e-91 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT5G15250 293 / 5e-91 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT1G06430 292 / 1e-90 FTSH8 FTSH protease 8 (.1) AT1G50250 291 / 2e-90 FTSH1 FTSH protease 1 (.1) AT3G47060 293 / 6e-90 FTSH7 FTSH protease 7 (.1) AT5G58870 291 / 2e-89 FTSH9 FTSH protease 9 (.1) AT5G42270 289 / 2e-89 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G07510 280 / 3e-85 FTSH10 FTSH protease 10 (.1) AT2G26140 276 / 2e-84 FTSH4 FTSH protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003049 [exp] 947 / 0 AT3G02450 685 / 0.0 cell division protein ftsH, putative (.1) Lus10012277 [exp] 294 / 7e-94 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10001054 [exp] 294 / 2e-91 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10021824 [exp] 294 / 5e-91 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 293 / 7e-91 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001420 [exp] 294 / 2e-90 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001203 [exp] 293 / 5e-90 AT5G58870 1093 / 0.0 FTSH protease 9 (.1) Lus10005868 [exp] 293 / 6e-90 AT5G58870 1105 / 0.0 FTSH protease 9 (.1) Lus10018210 [exp] 288 / 4e-88 AT5G58870 1049 / 0.0 FTSH protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G106500 [exp] 764 / 0 AT3G02450 657 / 0.0 cell division protein ftsH, putative (.1) Potri.002G215100 [exp] 297 / 1e-92 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.001G249100 [exp] 297 / 2e-91 AT5G58870 997 / 0.0 FTSH protease 9 (.1) Potri.002G012000 [exp] 294 / 2e-91 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G220366 [exp] 280 / 2e-91 AT1G06430 405 / 1e-138 FTSH protease 8 (.1) Potri.014G139500 [exp] 293 / 1e-90 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 291 / 1e-90 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.009G043100 [exp] 294 / 2e-90 AT5G58870 1039 / 0.0 FTSH protease 9 (.1) Potri.005G249200 [exp] 291 / 2e-90 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.009G033600 [exp] 284 / 1e-86 AT1G07510 1114 / 0.0 FTSH protease 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10034097 pacid=23154703 polypeptide=Lus10034097 locus=Lus10034097.g ID=Lus10034097.BGIv1.0 annot-version=v1.0 ATGAGGATGAAGAGAATACGAGTTAGGTCAGCCATAAGTGATTTCATTTTGTTTCTTAAGAAGAATTTGAGAAGAAGGGAGGCACTTTATGCTTCAATCT CTATTGGATTGGCAATGTGTTACTTGTTTCTGAGGCTGGCAGCTGTGCCATCTTACAAGATTGTTCCTTATTCTGACTTGATAGGATCCCTGCAGAATGG TTCTGTTAGTAAAGTTTTACTCGAAGAGGGGTCTCGTCGGATATATTATAACATTGACTCTCCAGGGACCTCAAATAACCAAAACTCAGAAGATCAGTCT CCTTCTGTAGTTGTTCCTAATGAGTGTTTAGCTGGCTCAGGTCCTGCTGTTGAAGGTATTGTCTTAGATGATCAGTCTCAAGCTGTAGCAATTGCAGAAG GCGTTGCAGCTTCACAACCATCGAGGGGTGCTCAGTTGGGCAAGGTATTATTAAAACCTCGAGCATCGAAACCTAAGTGGCAGTTTGCGACTAGGAAAAT GGATCATGATGAGAAGTTTCTACTTAGTTTGTTGAGGGAAAAGGGGACAACTTATAGCTCTGCTCCCCAATCAGTTTGGATGTCAATGAGGAGTTTGCTG CTAACTATAATTGCTTTATGGATTCCTTTAACTCCTGTGATGTGGCTTCTATATCGCCAGCTTTCGGCTGCCAATAGTCCTGCAAAGAAGCGGCGGCCAA CTAATCGGACTGTCACCTTTAATGACGTGGATGGTGTTGATGCTGCTAAGGCAGAACTTATTGAGATAGTCTCGTGCCTTCAAGGAGCTATAAAATACCA AACTCTGGGTGCAAAACTACCCAGAGGTGTATTGTTGGTTGGTCCTCCGGGGACGGGAAAGACATTGCTGGCTCGTGCAGTAGCAGGAGAAGCCGGAGTC CCATTTTTCAGCGTCTCCGCCAGTGAATTTGTGGAAATGTTTGTTGGAAGAGGAGCAGCACGCATCAGAGACCTGTTTAATGCTGCCAGGAAATCTGCTC CGTCTATTATATTCATCGATGAACTTGATGCAGTTGGAGGAAGACGTGGTCGTAGCTTCAACGATGAACGAGATCAAACACTAAATCAGTTGCTTACAGA AATGGATGGATTCGAGTCAGAGATGAGAGTGGTGGTGATTGCAGCTACAAACAGACCAGAGGCACTGGACCCTGCCCTATGTCGTCCGGGGAGATTCTCG AGAAAGGTGTTGGTAGAAGAACCAGATGAAGAAGGGAGGAGAAAGATATTAGCCATACATTTGAGGGAAGTTCCTCTGGAAGAAGACGCTGATCTTATAG CTGATCTAATTGCTTCGTTAACACCAGGTCTCGTAGGTGCTGATCTTGCAAACATCGTTAATGAGGCTGCTTTACTCGCTGCGAGGAGAGGTGGTGAGAG TGTAGCAAGGGAAGATGTAATGGAAGCCATTGAAAGAGCGAAGTTTGGGATCAATGATAAGAAACTAAGGCCGAGTTCGATAAGCAAGGAGATAGGGAAG CTGTTCCCGTGGGTTCTGCCATCTTTAGCGAGGAAGACACAAGGTGATACGCAAGGGGAAGGGCCTTTAGGTTACCGAACATTGAGCTAA
AA sequence Show only first row Show all	>Lus10034097 pacid=23154703 polypeptide=Lus10034097 locus=Lus10034097.g ID=Lus10034097.BGIv1.0 annot-version=v1.0 MRMKRIRVRSAISDFILFLKKNLRRREALYASISIGLAMCYLFLRLAAVPSYKIVPYSDLIGSLQNGSVSKVLLEEGSRRIYYNIDSPGTSNNQNSEDQS PSVVVPNECLAGSGPAVEGIVLDDQSQAVAIAEGVAASQPSRGAQLGKVLLKPRASKPKWQFATRKMDHDEKFLLSLLREKGTTYSSAPQSVWMSMRSLL LTIIALWIPLTPVMWLLYRQLSAANSPAKKRRPTNRTVTFNDVDGVDAAKAELIEIVSCLQGAIKYQTLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGV PFFSVSASEFVEMFVGRGAARIRDLFNAARKSAPSIIFIDELDAVGGRRGRSFNDERDQTLNQLLTEMDGFESEMRVVVIAATNRPEALDPALCRPGRFS RKVLVEEPDEEGRRKILAIHLREVPLEEDADLIADLIASLTPGLVGADLANIVNEAALLAARRGGESVAREDVMEAIERAKFGINDKKLRPSSISKEIGK LFPWVLPSLARKTQGDTQGEGPLGYRTLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02450			cell division protein ftsH, pu...		Lus10034097 [exp]	0	1
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10021972 [exp]	2.2	0.9412
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10017673 [exp]	2.4	0.9123
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	5.5	0.9038
AT1G21790			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10018165 [exp]	6.2	0.8711
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	7.1	0.9069
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	9.2	0.8924
AT3G23760			unknown protein		Lus10043212 [exp]	9.4	0.9006
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Lus10032522 [exp]	10.0	0.8831
AT5G19540			unknown protein		Lus10034912 [exp]	11.6	0.8908
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015111 [exp]	11.8	0.9038

Compare expression of checked genes

Lus10034097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.