Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 874 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 830 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 793 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 710 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 588 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 573 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 548 / 0 Xanthine/uracil permease family protein (.1) AT2G05760 539 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 442 / 4e-150 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 375 / 2e-125 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004228 [exp] 929 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10043460 [exp] 920 / 0 AT5G62890 892 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 896 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 833 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 829 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 592 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 564 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 561 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10014777 [exp] 548 / 0 AT1G65550 751 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077400 [exp] 903 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 898 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 824 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 815 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 626 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 569 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 566 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 556 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 535 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 468 / 6e-160 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10034125 pacid=23154775 polypeptide=Lus10034125 locus=Lus10034125.g ID=Lus10034125.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGGAAGGAAGAAACCCCACAACCACACCCACCCAAGGAGCAGCTTCCCAACATTTCTTACTGCATTACCAGCCCTCCTCCATGGCCCGAGG CTATACTACTTGGTTTCCAGCACTACCTTGTGATGCTTGGGACTACTGTTCTCATCCCCACTGCTCTCGTCCCACAAATGGGAGGTGGAAACAAAGAGAA GGCACAAGTGATCCAGACTCTGCTCTTTGTTGGTGGTTTGAACACATTGCTTCAGAGTATGTTTGGCACTAGGTTGCCTGCTGTTATTGGAGGATCTTAC ACCTTCGTCCCTACAACAATCTCAATCATCCTTGCTGGTCGATTTAGTGACAACATAGACCCTGTGGAGAAATTTAAGAGGATTATGCGTGCAATCCAAG GTGCGCTAATTGTTGCTTCAACCCTCCAGATTGTCCTAGGATTCAGTGGTCTGTGGCGTAATGTTGCCAGGTTCCTAAGTCCCCTTTCTGCTGTTCCGTT GGTTGGCCTAGTTGGGTTTGGCTTGTATGAACTTGGTTTTCCTGGGGTTGCCAAATGCATTGAGATTGGTCTACCAGAGCTTATCATATTGCTCTTTATT TCACAGTACATGCCTCATGTGATCAAATCAGGGAAACACATCTTTGATCGGTTTGCTGTCATTTTTGCAATAGTAATTGTCTGGATATATGCACACTTAC TCACTGTAGGTGGGGCTTATAAAGGTGCCGCACCAAAGACGCAAGTAACTTGCCGCACGGATCATGCAGGGTTGATTGATGCTGCACCATGGCAAGTTTT TCTCACTTTGAAGTGGCTGTCTGAGCTCTATTTTATTTTTTTGCGAGCTCTTTTTTTCCACAGTTTCGAAACCTCAATTACAAGCTCAGCTAACGTGAAA GAAGCCAACTGCCTGATTAGAGTTCCCTACCCCTTCCAATGGGGAGCACCTACTTTTGATGCCGGTGAAGCCTTCGCTATGATGATGGCTTCTTTTGTTG CTCTTGTAGAGTCTACTGGTGCCTTCATTGCTGTATCGAGGTATGCAAGTGCAACTCCCATGCCACCTTCTGTTCTCAGTCGTGGTGTTGGTTGGCAGGG AGTAGCCATTTTGCTTTCTGGACTGTTTGGGACTGTGAATGGTTCATCTGTCTCTGTAGAGAATGCTGGTCTTTTGGCCCTAACAAGAGTTGGCAGCCGA AGGGTTGTTCAGATATCTGCTGGATTCATGATTTTCTTCTCAATCCTTGGAAAATTTGGGGCAGTATTTGCTTCCATTCCAGCTCCTATAATAGCAGCAT TGTATTGCCTTTTCTTCGCATATGTGGGGGCTGGAGGTTTAAGCTTCTTGCAGTTCTGCAATCTGAACAGCTTCAGAACAAAGTTCATACTGGGTTTCTC AATATTCATAGGCTTGTCAATTCCACAGTACTTTAACGAGTACACTGCAATCAACGGCTATGGTCCAGTTCACACTGGAGCAAGATGGTTCAACGACATG GTAAATGTGCCCTTCTCCTCAGAAGCCTTTGTTGCCGGTGTGGTTGCGTACTTCCTAGACAACACATTGCACAAGAAAGACAGTGCTATCAGGAAAGACA GAGGGAAGCACTGGTGGGCAAAATTCAAGACATTCAAGGGTGATACCAGAAGTGAAGAGTTCTACTCTTTGCCCTTCAACCTTAACAAATACTTCCCATC GGTCTGA
AA sequence Show only first row Show all	>Lus10034125 pacid=23154775 polypeptide=Lus10034125 locus=Lus10034125.g ID=Lus10034125.BGIv1.0 annot-version=v1.0 MAGGKEETPQPHPPKEQLPNISYCITSPPPWPEAILLGFQHYLVMLGTTVLIPTALVPQMGGGNKEKAQVIQTLLFVGGLNTLLQSMFGTRLPAVIGGSY TFVPTTISIILAGRFSDNIDPVEKFKRIMRAIQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVGLVGFGLYELGFPGVAKCIEIGLPELIILLFI SQYMPHVIKSGKHIFDRFAVIFAIVIVWIYAHLLTVGGAYKGAAPKTQVTCRTDHAGLIDAAPWQVFLTLKWLSELYFIFLRALFFHSFETSITSSANVK EANCLIRVPYPFQWGAPTFDAGEAFAMMMASFVALVESTGAFIAVSRYASATPMPPSVLSRGVGWQGVAILLSGLFGTVNGSSVSVENAGLLALTRVGSR RVVQISAGFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSIFIGLSIPQYFNEYTAINGYGPVHTGARWFNDM VNVPFSSEAFVAGVVAYFLDNTLHKKDSAIRKDRGKHWWAKFKTFKGDTRSEEFYSLPFNLNKYFPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49960			Xanthine/uracil permease famil...		Lus10034125 [exp]	0	1
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10012595 [exp]	3.0	0.7305
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10021625 [exp]	9.8	0.7361
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	22.2	0.7554
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	25.7	0.7399
AT1G80230			Rubredoxin-like superfamily pr...		Lus10011494 [exp]	28.5	0.7393
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	29.9	0.7051
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10028087 [exp]	39.2	0.7166
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Lus10030492 [exp]	47.3	0.7010
AT3G02645			Plant protein of unknown funct...		Lus10022538 [exp]	61.2	0.6606
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10037049 [exp]	66.9	0.6953

Compare expression of checked genes

Lus10034125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.