Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09770 1073 / 0 MYB ATCDC5, AtMYBCDC5 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) AT5G02320 76 / 5e-14 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 75 / 1e-13 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G18100 74 / 4e-13 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT4G33450 69 / 1e-12 MYB ATMYB69 myb domain protein 69 (.1) AT3G09370 71 / 2e-12 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT5G40360 70 / 3e-12 MYB ATMYB115 myb domain protein 115 (.1) AT1G17950 68 / 3e-12 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT2G02820 69 / 5e-12 MYB ATMYB88 myb domain protein 88 (.1.2) AT3G27920 67 / 6e-12 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043452 [exp] 925 / 0 AT1G09770 641 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10043451 [exp] 457 / 3e-155 AT1G09770 444 / 8e-152 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10031326 [exp] 72 / 4e-13 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10042561 [exp] 70 / 4e-13 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10025351 [exp] 73 / 6e-13 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10031900 [exp] 72 / 7e-13 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10024394 [exp] 72 / 8e-13 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10011687 [exp] 72 / 2e-12 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 71 / 4e-12 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018400 [exp] 1256 / 0 AT1G09770 1168 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Potri.013G046300 [exp] 1256 / 0 AT1G09770 1131 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Potri.006G085600 [exp] 80 / 4e-15 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.018G038000 [exp] 76 / 1e-13 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.008G148400 [exp] 73 / 5e-13 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.012G039400 [exp] 70 / 6e-13 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.006G241700 [exp] 72 / 1e-12 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) Potri.015G033600 [exp] 69 / 1e-12 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.015G041500 [exp] 72 / 2e-12 AT3G18100 627 / 0.0 myb domain protein 4r1 (.1.2.3) Potri.017G017600 [exp] 68 / 2e-12 AT1G17950 243 / 3e-81 myb domain protein 52 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [flax] [poplar] PF11831 [flax] [poplar] Myb_Cef pre-mRNA splicing factor component
Representative CDS sequence Show only first row Show all	>Lus10034133 pacid=23154643 polypeptide=Lus10034133 locus=Lus10034133.g ID=Lus10034133.BGIv1.0 annot-version=v1.0 ATGAGGATTATGATCAAAGGAGGTGTTTGGAAAAACACCGAGGATGAGATCCTCAAGGCCGCGGTTATGAAGTACGGAAAGAACCAGTGGGCTCGTATTT CTTCGCTTCTCGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTCGACCCTTCAATCAAAAAGACTGAGTGGACCAGAGAAGAGGA TGAGAAACTGCTGCATCTTGCTAAACTCATGCCCACACAATGGAGGACCATTGCACCGATTGTTGGGCGCACTCCTTCCCAGTGTCTTGAACGGTATGAG AAGCTCCTTGATGCGGCTTGTGTGAAGGATGATAACTATGAACCTAGTGATGACCCTCGCAAGCTGCGGCCAGGAGAAATTGATCCTAATCCTGAATCCA AGCCAGCGCGTCCTGATCCTGTTGACATGGATGAGGATGAGAAGGAAATGCTTTCTGAAGCACGAGCTAGGTTAGCTAACACTAGAGGTAAGAAGGCAAA AAGGAAAGCTAGAGAAAAACAGCTTGAAGAGGCTAGGAGGCTTGCTTCCTTACAGAAAAGAAGAGAGCTTAAAGCTGCTGGTATTGATGCAAGGCAGAGG AGAAGGAAAAGGAAAGGGATTGACTATAATTCAGAAATTCCCTTTGAAAAGAGGCCTCCTCCTGGCTTTTATGATGTTGCTGATGAAGATAGAACGGTAG AACAGCCAATGTTCCCAACAACCATTGAGGAACTTGAAGGAAAACGACGGGTAGATGTAGAAGCACAGTTAAGAAAGCAGGACATAGCAAAGAATAAAAT TGCTCAGAGGCAGGATGCTCCTGCAGCCATCCTGCAGGCTAACAAGCTTAATGACCCTGAGACAGTTAGGAAGAGGTCAAAGTTGATGCTTCCTGCACCA CAGATTTCTAACGAGGATTTGGCGGAAATTGCAAAGATGGGTTATGCTAGTGATCTCATTGCTGAGAGTGAGGAACTAACAGGGGGGAGTGGTGCAACAC GGGCACTTCTAGTAAACTATGCCCAGACACCACATCAGGGAATGACTCCCCTGCGTACCCCACAGAGAACTCCTGCTGGTAAGGGTGATGCCATTATGAT GGAGGCTGAAAACCTTGCTCGGTTGAGAGAGTCACAGACACCATTATTAGGGGGAGATAATCCAGAGTTGCATCCCTCAGATTTCTCGGGGGTGACTCCA AAGAAGCGGGAAATCCAAACTCCAAACCCGATGTTGACTCCTTCAATGACTCCGTCAATGACTCCTTCAATGACTCCGGGAAGAGCTGGTGTTACTCCTA GAATTGGCATGACGCCATCACGTGATGGATATTCCTTTGCTATGACTCCAAAAGGGACACCCATTAGGGATGAACTCCACATAAATGAAGACATGGATAT GCATGATAGTGGTAAGCTCGAGCGAAGAAAACAAGCTGATCTGAGGGAGAACCTGCGAACTGGCCTTAGTAATTTGCCACAGCCCAGGAATGAATATCAG ATTGTTGTGCAACCACCTCCAGAAGATTCTGAAGAACCAGAAGAGAAGATCGAAGAGGATATGTCTGATAGAATGGCCAGAGAAAAGGCTGAGGAGGAAG CACGGTTGCAGGCATTGCTTAGGAAGCGATCAAAAGTCCTGCAAAGGGAGCTACCAAGGCCCCCTGCTGCTTCTTTGGAATTGATTAGAAGTTCTTTGCA GAGAGCTGATGGAGACAAGAGTTCTTTTGTTCCTCCAACGGTAATTGAGCAAGCTGATGAATTGGTTAGGAAAGAGCTTTTAAGTTTGTTGGAGCATGAT AATGCAAAGTACCCACTTGAAGAGAAACAAAGCAAGGAGAAGAAGAAAGGTACCAAGCGTTCAGCAAATGGTACTGCTGCTTCTATCCCTATAATAGAGG ACTTTGAAGAAGATGAGCTGAAAGAGGCTGATTCTTTAATAAGAGCAGAGGCTCAACATGTTCGTGTGGCTATGGGGCACAAAGAAGAGTCTCTTGAAGA ATTTGTTGATGCACACAAGACTTGCCTGAATGATTTAACGTACTTTCCTACTCGAGCTGCCTATGGTCTCTCAAGTGTTGCTGGAAATGTAGAGAAATTA GCTGCTTTGCAGTATGAGTTTGAGAACGTCAAGACAAGGTTGGAGGCCGAAAGGGAGAAGGCATTACGCCTTGAAAAGAAGGTCAATGTACTGACACAAG GTTATCAGATACGTGCCGAGAGACAGCTTATTCCGCCAATTGAGTCAATCTTAAAGCAAATAGACACTGCTAGAACGGAGTTGGAATGCTTTCAAGCATT ACAAAAGCAAGAGCAATTAGCTGCATCTCATAGAATCAATGGTCTCTGGGAGGAAGTACAGAAGCAGAAGGAACTGGAGAAAACTCTTCAGAAACGTTAT GGAGATCTTGCATCTGAGCTAGAAAGGATGCAACTGCTTGCCAATCATTACAGAGAACAAGCCAAACAAGAAGAGATTGCCGCCGGGAACCAGGCTGTTG AATTGGCTACTGTGGATGCTGCTGATCAAGTTGCCATGCCAAATACAGAGAGTTCTGAGATAATGTCTACGGATGGTGCCATCCCTGCTGATGAAACTGC ACAGAAAGAAATTAACCATTCAGGCACTGAAAATCTGAATGCGGTTTCTGGTCAGGACAATCCAGATGCAGATGCGGAACTAGTTGTTAGCACTGCAGTT GATGGTGCAGCAATTTCTGAGGACCTGAAGCAGGGCTTAGACGAGACAAACCCTTGTGGTGGCAAAAATCGTGTTGAGGACGCAGTTGAAGTTTCAGCTA CAGAAGGTGAAGGGAAGTCAGAAAGCAATGATGTTATAATGACTGAATAA
AA sequence Show only first row Show all	>Lus10034133 pacid=23154643 polypeptide=Lus10034133 locus=Lus10034133.g ID=Lus10034133.BGIv1.0 annot-version=v1.0 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYE KLLDAACVKDDNYEPSDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDARQR RRKRKGIDYNSEIPFEKRPPPGFYDVADEDRTVEQPMFPTTIEELEGKRRVDVEAQLRKQDIAKNKIAQRQDAPAAILQANKLNDPETVRKRSKLMLPAP QISNEDLAEIAKMGYASDLIAESEELTGGSGATRALLVNYAQTPHQGMTPLRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGDNPELHPSDFSGVTP KKREIQTPNPMLTPSMTPSMTPSMTPGRAGVTPRIGMTPSRDGYSFAMTPKGTPIRDELHINEDMDMHDSGKLERRKQADLRENLRTGLSNLPQPRNEYQ IVVQPPPEDSEEPEEKIEEDMSDRMAREKAEEEARLQALLRKRSKVLQRELPRPPAASLELIRSSLQRADGDKSSFVPPTVIEQADELVRKELLSLLEHD NAKYPLEEKQSKEKKKGTKRSANGTAASIPIIEDFEEDELKEADSLIRAEAQHVRVAMGHKEESLEEFVDAHKTCLNDLTYFPTRAAYGLSSVAGNVEKL AALQYEFENVKTRLEAEREKALRLEKKVNVLTQGYQIRAERQLIPPIESILKQIDTARTELECFQALQKQEQLAASHRINGLWEEVQKQKELEKTLQKRY GDLASELERMQLLANHYREQAKQEEIAAGNQAVELATVDAADQVAMPNTESSEIMSTDGAIPADETAQKEINHSGTENLNAVSGQDNPDADAELVVSTAV DGAAISEDLKQGLDETNPCGGKNRVEDAVEVSATEGEGKSESNDVIMTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10034133 [exp]	0	1
AT3G55160			unknown protein		Lus10007252 [exp]	3.9	0.9315
AT3G22270			Topoisomerase II-associated pr...		Lus10027297 [exp]	4.1	0.8791
AT5G64270			splicing factor, putative (.1)		Lus10034803 [exp]	7.6	0.9195
AT2G41620			Nucleoporin interacting compon...		Lus10039624 [exp]	11.4	0.9164
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	14.0	0.8468
AT4G40000			S-adenosyl-L-methionine-depend...		Lus10026840 [exp]	14.3	0.9050
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	15.1	0.8777
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	15.2	0.8744
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	15.6	0.8400
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	15.6	0.8897

Compare expression of checked genes

Lus10034133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.