Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40540 1152 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 910 / 0 Potassium transporter family protein (.1) AT1G70300 910 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT3G02050 720 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G30070 702 / 0 ATKUP1, ATKT1P, ATKT1 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) AT4G23640 671 / 0 ATKT3, KUP4, TRH1 TINY ROOT HAIR 1, Potassium transporter family protein (.1) AT1G60160 605 / 0 Potassium transporter family protein (.1) AT4G19960 602 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT4G13420 597 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT2G35060 593 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030539 [exp] 1353 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10030857 [exp] 946 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030632 [exp] 939 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012992 [exp] 862 / 0 AT1G70300 1188 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10014531 [exp] 800 / 0 AT5G14880 1098 / 0.0 Potassium transporter family protein (.1) Lus10029050 [exp] 700 / 0 AT2G40540 563 / 0.0 potassium transporter 2 (.1.2) Lus10012888 [exp] 633 / 0 AT5G14880 566 / 0.0 Potassium transporter family protein (.1) Lus10013304 [exp] 597 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) Lus10012993 [exp] 592 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056500 [exp] 1229 / 0 AT2G40540 1272 / 0.0 potassium transporter 2 (.1.2) Potri.013G083400 [exp] 1206 / 0 AT2G40540 1225 / 0.0 potassium transporter 2 (.1.2) Potri.010G094300 [exp] 929 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 923 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.014G144900 [exp] 777 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 759 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.009G073500 [exp] 746 / 0 AT2G30070 1092 / 0.0 POTASSIUM UPTAKE TRANSPORTER 1, potassium transporter 1 (.1) Potri.003G133900 [exp] 702 / 0 AT4G23640 947 / 0.0 TINY ROOT HAIR 1, Potassium transporter family protein (.1) Potri.012G043501 [exp] 676 / 0 AT2G40540 726 / 0.0 potassium transporter 2 (.1.2) Potri.015G034200 [exp] 671 / 0 AT2G40540 741 / 0.0 potassium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF02705 [flax] [poplar] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Lus10034215 pacid=23175915 polypeptide=Lus10034215 locus=Lus10034215.g ID=Lus10034215.BGIv1.0 annot-version=v1.0 ATGTCTCAGCTTGATCGTTTCAGAGTAGGAGCCATGGATTTTAGGTTCTCCAAGATGTCAGAGGGTCCAAAGAAGGATTCGTGGAAGACGCTGATGCTGT TGGCATATCAGAGCCTTGGAGTAGTCTATGGGGACCTTGGCATATCTCCACTGTATGTTTACAAGAGCACATTTGCGGACGACATCCACCATTCAGAGAG CAACGACGAGATTTACGGTGTTCTATCGTTTGTGTTCTGGACACTCACTTTGGTCCCCTTGTTCAAGTACGTTTTCATTGTTCTCAGGGCTGATGATAAC GGGGAGGGTGGTACTTTCGCATTGTACTCTCTAATCTGCCGACACGCCAAAGTTAACCTTCTACCAAATAGGCAGGTTTCGGATGAATCTCTGTCCACAT ATATCACAGAAGAACCCCCAGAGAAGAAAAGTGTCTGCATGAAGTCGTCACTCGAGAAGCATAAGGGTTTGCACACTGCATTGTTGATCTTGGTTCTTCT TGGCACTTGTATGGTAATTGGGGATGGTCTCCTCACTCCAGCAATTTCGGTTTTCACTGCAGTGTCTGGACTTGAGTTGTCCATGGACAAGCATCAATAT GCAGTTATTCCAATTACATGCTTCACCTTGGTGTGTCTTTTTTCACTTCAACATTATGGCACACATCGTGTCGGGTTCTTATTTGCACCGATCATCCTGT TGTGGCTATTCTGCATCAGTGCCCTTGGCATCTACAATATATTCCACTGGAACATGCATGTTTATAAAGCTCTTTCCCCATACTACATGTACAAGTTCTT GAAGAAAACAAAGAAATCTGGTTGGATGTCTTTGGGAGGGATATTATTGTGCATAACAGGATCAGAAGCAATGTTTGCTGATCTTGGACACTTCTCATAC ACTGCAATTCAGGTTGCATTCAGCTTTCTGGTTTATCCAGCGCTTACTCTAGCATACATGGGTCAAGCTGCTTATCTCTCACAGCATCACGGTCTTGCTA GTGACATTAGCTTCTATATTTTTGTTCCAGAAAAACTCAGAGTGCCAGTGCTCATACTTGCCATTCTTGCTTCTGTGGTCGGAAGCCAAGCAATCATCAG CGGGACCTTCTCGATCATAAACCAGAGCCAGTCACTAAGCTGTTTCCCAAGGGTGAAGGTGGTTCACACTTCCGATAAGATACACGGCCAGATTTACATC CCTGAGATCAACTGGATTCTGATGATCCTCTGCATTGCAGTAACTATTGGATTCCGGGACACAAAACATATGGGGAATGCATCAGGATTAGCTGTGATGA CTGTGATGCTGGTTACAACTTGTCTTACTTCCTTAGTCATTGTGCTCTGCTGGCACAAGCCACCAATACTCGCTCTCGGCTTCCTGCTTTTCTTTGGCTC GATCGAGTTGCTATACTTCTCAGCCTCGCTAACCAAGTTCAAAGAAGGTGCCTGGCTCCCCATGCTCATGGCCCTCATCCTAGTCAGCATCATGCTGATC TGGCATTACGCCACCGTGAAAAAGTACGAGTATGACTTGCACAACAAGGTATCACTAGACTGGCTTTTAGCTCTGGGCCCGAGTTTGGGGGTTGCAAGAG TCCCCGGCATCGGTCTAGTTTTCAGCGATCTCACCTCAGGTATACCGGCGAACTTCTCTCGATTCGTAACCAACCTCCCTGCCTACCACCGGGTCGTAGT TTTCGTGTGCGTCAAGTCAGTCACTGTCCCCCACGTTCCACCGGCTGAGAGGTATCTTGTCGGACGTGTTGGTCCACCCGAGCATCGTTCATACAGGTGC ATTGTTCGTTATGGATACCGTGATGTCCACCAGGATGTTCACTCATTCGAGTCTGAGCTTGTCGCCAAGCTGGCAGACTTCATCCGGTACGACTGGCAAC GAGCAAACGGCCAATTCTCTCCCGATGATGATGATGATGCGGTTCGGTCAGTAGCTTCATCGAACGAGTGCAGGCTGACTGTGATAGGAACCCGGTCGTT CACTCGAAACCCGGCTTACGAGGTGGACGACACCGTGCAGGCAGCCAGTGCTTCGGTAGGGGAAAGGACGGTAGATAGCTTGAGTGAAGTGATAGAGATG GAACCGGTCGATAATAGAGCTGTAAGGAGAGTGAGGTTTGCGGTTGATGATGAGTCATCCGAAACATATCGAACCGATACTGACATTCAGATGGAAGAAG AGCTGGGGGATCTGCTATCGGCACAAGAGTCCGGTACTGCGTTCATACTGGGGCATTCTCATGTCCGAACTAAACAAGGGTCGTCGATCTGGAAGCGATT CGCCATCGATTTCGGGTATAACTTCTTGAGAAGGAACTGCAGGGGACCCGATGTTTCGCTCAAAGTTCCACCAGTGTCACTTTTGGAAGTAGGAATGGTA GCTACCCCTGCCACCTCCACTAGCTCATCGACACTTCCCCTGCCTCATTCCCCTGTTTCAACTTCTTCCTCGTACTTGGCCGGCGGCGGAAATCGACGGC GGCGGGTCCGGACCCTGAGAACGGCTGCGGCGAAATCATCCGGCAGGGAGGAGGAGCCGAAGAAGACTACAAAGCAGTCTCTGTTCACGTCGCTGACGGA TGCGCTGGATTTCGCACAGGTCCGGTCTGAAAAGGATGCGGAGCTACTGGAAGAGGCGAGGGAAAATACCCAGTCCGGCGGGAGGATGAGCAGGGAACAG TACGGTGCTCTGAGGAGGAAGATCGGCGGCACTTACAAGGACTTCTTCAAGTCCTACGTCGAGGTGGAAGGGGATTATGTGGAGGAAGGGTGGGTGGACA AGACATGCAAGATATGCAAGAAGGACACAAGGGGAGATGAGAGGCAGGTTGATAAGCTTGGGAGATATGTCCACGTGGCTTGCTTGGAATCCAACGGTGG TGGAGATACCGGCGCCGGAAATTTCTTTACCAGGCTTTTCTCCAGATCGTGA
AA sequence Show only first row Show all	>Lus10034215 pacid=23175915 polypeptide=Lus10034215 locus=Lus10034215.g ID=Lus10034215.BGIv1.0 annot-version=v1.0 MSQLDRFRVGAMDFRFSKMSEGPKKDSWKTLMLLAYQSLGVVYGDLGISPLYVYKSTFADDIHHSESNDEIYGVLSFVFWTLTLVPLFKYVFIVLRADDN GEGGTFALYSLICRHAKVNLLPNRQVSDESLSTYITEEPPEKKSVCMKSSLEKHKGLHTALLILVLLGTCMVIGDGLLTPAISVFTAVSGLELSMDKHQY AVIPITCFTLVCLFSLQHYGTHRVGFLFAPIILLWLFCISALGIYNIFHWNMHVYKALSPYYMYKFLKKTKKSGWMSLGGILLCITGSEAMFADLGHFSY TAIQVAFSFLVYPALTLAYMGQAAYLSQHHGLASDISFYIFVPEKLRVPVLILAILASVVGSQAIISGTFSIINQSQSLSCFPRVKVVHTSDKIHGQIYI PEINWILMILCIAVTIGFRDTKHMGNASGLAVMTVMLVTTCLTSLVIVLCWHKPPILALGFLLFFGSIELLYFSASLTKFKEGAWLPMLMALILVSIMLI WHYATVKKYEYDLHNKVSLDWLLALGPSLGVARVPGIGLVFSDLTSGIPANFSRFVTNLPAYHRVVVFVCVKSVTVPHVPPAERYLVGRVGPPEHRSYRC IVRYGYRDVHQDVHSFESELVAKLADFIRYDWQRANGQFSPDDDDDAVRSVASSNECRLTVIGTRSFTRNPAYEVDDTVQAASASVGERTVDSLSEVIEM EPVDNRAVRRVRFAVDDESSETYRTDTDIQMEEELGDLLSAQESGTAFILGHSHVRTKQGSSIWKRFAIDFGYNFLRRNCRGPDVSLKVPPVSLLEVGMV ATPATSTSSSTLPLPHSPVSTSSSYLAGGGNRRRRVRTLRTAAAKSSGREEEPKKTTKQSLFTSLTDALDFAQVRSEKDAELLEEARENTQSGGRMSREQ YGALRRKIGGTYKDFFKSYVEVEGDYVEEGWVDKTCKICKKDTRGDERQVDKLGRYVHVACLESNGGGDTGAGNFFTRLFSRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10034215 [exp]	0	1
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039479 [exp]	8.6	0.7562
AT4G06634	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10011009 [exp]	10.6	0.7105
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	11.0	0.7490
AT5G54855			Pollen Ole e 1 allergen and ex...		Lus10001821 [exp]	20.3	0.7436
AT5G52660	MYB		Homeodomain-like superfamily p...		Lus10036392 [exp]	23.0	0.7185
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10005372 [exp]	23.8	0.7370
AT4G03030			Galactose oxidase/kelch repeat...		Lus10024874 [exp]	32.1	0.7319
AT3G22550			Protein of unknown function (D...		Lus10025770 [exp]	35.0	0.7082
AT3G63220			Galactose oxidase/kelch repeat...		Lus10042607 [exp]	36.8	0.7292
AT1G09310			Protein of unknown function, D...		Lus10018630 [exp]	38.3	0.7037

Compare expression of checked genes

Lus10034215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.