Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13300 244 / 6e-79 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT1G25550 233 / 2e-74 GARP myb-like transcription factor family protein (.1) AT3G25790 226 / 2e-71 GARP myb-like transcription factor family protein (.1) AT1G68670 151 / 1e-42 GARP myb-like transcription factor family protein (.1) AT2G03500 147 / 2e-40 GARP Homeodomain-like superfamily protein (.1) AT1G49560 110 / 1e-27 GARP Homeodomain-like superfamily protein (.1) AT4G37180 97 / 2e-22 GARP Homeodomain-like superfamily protein (.1.2) AT3G04030 69 / 6e-13 GARP Homeodomain-like superfamily protein (.1.2.3) AT4G28610 69 / 7e-13 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G58080 69 / 1e-12 GARP ARR18 response regulator 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041485 [exp] 241 / 3e-76 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10021699 [exp] 171 / 2e-50 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 165 / 7e-48 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10043304 [exp] 141 / 7e-38 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 132 / 4e-35 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10012056 [exp] 126 / 3e-33 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 119 / 2e-30 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10019639 [exp] 103 / 3e-25 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10009334 [exp] 102 / 6e-25 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117500 [exp] 178 / 8e-53 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 172 / 2e-50 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 136 / 4e-36 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 128 / 1e-33 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 127 / 9e-33 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 125 / 2e-32 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 111 / 8e-28 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 110 / 2e-27 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.008G213500 [exp] 70 / 5e-13 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.018G111300 [exp] 70 / 5e-13 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034280 pacid=23175994 polypeptide=Lus10034280 locus=Lus10034280.g ID=Lus10034280.BGIv1.0 annot-version=v1.0 ATGATAGTTATGGATTTCCCCGATCAGAGGAAGCGCTGCCACCAGTATGTCGACGCCTTGGAAGAGGAGCGCCGGAAAATTAAGGTTTTCCAGCGTGAAC TTCCTCTTTGTTTCGAGCTCGTCACCCAAGCGATCGATGCCTGCCGGAGGGATTTGTCCGGAACGACGACTGAGTACAACATGCCTGGTCAATCTGAATG CTCCGAGCATACCTCCAGTGGAGGTCCTGTTCTTGAAGAATTCATCCCTATCAAGCCCCACAACGATGATGATCAGGATGAGAATCAAGATAACAACAAC AGTGCCCACCACGAGGAGGATGACAATGATTATCATTTTCAAGATGAGAGATCACTGAAAAGGACTAGAGACGACGATAATAAGGATGAAGAGGATATCA ATAAGGAGAAGATGAATGACCATAAGAAGAAATCCGAGTGGCTCAGATCTGTTCAATTGTGGAACCAATCTCCAGATCCACCTTCCGTTAGAGAAGTACT GGGGGCGCAGAGAAAGCAAAGGCGGTGTTGGTCTCCAGAGCTTCACCGAAGATTCCTTCACGCTCTCCAACAGCTGGGCGGTTCACATGCTGCAACTCCG AAGCAAATTAGGGAGTTAATGAAGGTAGATGGGTTGAGTAATGATGAAGTCAAGAGCCATTTGCAGAAATACCGCCTGCATACACGGAGGCCGAGCCACG CCGTCCAAAACAACAGCAACCAGGCAGGCCCACACTTTGTAGTCGTGGGTGGGATATGGGTTCCGCCGCCGGCCGAATATGCAGCTGCGGCGGCGGCAGC TGCTGCCGGAGAAACATCAGCCATTATGGCTCATGGTGGAATGTATGCGCCTATAGCGACGGCACCGCCGCCACCTGCCACGACTAAAAAACAGCAGACT AGAAGTTCGGAAAGAAGAGGAGGCAGCAGCAGCAGCCACAGTGAAGGCGGAGGAGCTCATTCTTGTTCTCCGACCACGTCGTCCTCCACCCATACGGCCA CAAGCCCGCCGGCGATCTAA
AA sequence Show only first row Show all	>Lus10034280 pacid=23175994 polypeptide=Lus10034280 locus=Lus10034280.g ID=Lus10034280.BGIv1.0 annot-version=v1.0 MIVMDFPDQRKRCHQYVDALEEERRKIKVFQRELPLCFELVTQAIDACRRDLSGTTTEYNMPGQSECSEHTSSGGPVLEEFIPIKPHNDDDQDENQDNNN SAHHEEDDNDYHFQDERSLKRTRDDDNKDEEDINKEKMNDHKKKSEWLRSVQLWNQSPDPPSVREVLGAQRKQRRCWSPELHRRFLHALQQLGGSHAATP KQIRELMKVDGLSNDEVKSHLQKYRLHTRRPSHAVQNNSNQAGPHFVVVGGIWVPPPAEYAAAAAAAAAGETSAIMAHGGMYAPIATAPPPPATTKKQQT RSSERRGGSSSSHSEGGGAHSCSPTTSSSTHTATSPPAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	0	1
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Lus10031425 [exp]	1.0	0.7637
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Lus10026007 [exp]	3.2	0.7477
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	11.5	0.6654
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10010351 [exp]	11.6	0.7445
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	12.2	0.6863
AT1G68140			Protein of unknown function (D...		Lus10020957 [exp]	16.4	0.7284
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	33.8	0.6812
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10010440 [exp]	42.7	0.6950
AT3G53390			Transducin/WD40 repeat-like su...		Lus10026500 [exp]	53.0	0.6836
AT3G54880			unknown protein		Lus10038690 [exp]	58.8	0.6081

Compare expression of checked genes

Lus10034280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.