Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25530 533 / 0 Transmembrane amino acid transporter family protein (.1) AT5G40780 434 / 8e-152 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G24400 424 / 6e-148 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 407 / 5e-141 Transmembrane amino acid transporter family protein (.1) AT1G48640 402 / 3e-139 Transmembrane amino acid transporter family protein (.1) AT1G61270 373 / 1e-127 Transmembrane amino acid transporter family protein (.1) AT1G71680 358 / 8e-122 Transmembrane amino acid transporter family protein (.1) AT3G01760 351 / 4e-119 Transmembrane amino acid transporter family protein (.1) AT1G47670 246 / 2e-77 Transmembrane amino acid transporter family protein (.1) AT4G35180 166 / 4e-47 LHT7 LYS/HIS transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041482 [exp] 673 / 0 AT1G25530 666 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10041581 [exp] 429 / 2e-149 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10022329 [exp] 428 / 2e-149 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 417 / 1e-144 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041580 [exp] 409 / 8e-142 AT5G40780 652 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 409 / 1e-141 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10032074 [exp] 382 / 8e-132 AT5G40780 535 / 0.0 lysine histidine transporter 1 (.1.2) Lus10008263 [exp] 377 / 4e-128 AT1G71680 572 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032073 [exp] 280 / 3e-92 AT5G40780 451 / 8e-158 lysine histidine transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G128300 [exp] 567 / 0 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G118000 [exp] 556 / 0 AT1G25530 677 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 440 / 6e-154 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.001G335200 [exp] 420 / 3e-146 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 417 / 2e-145 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G055800 [exp] 408 / 1e-141 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 399 / 8e-138 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2) Potri.014G036500 [exp] 253 / 9e-80 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 221 / 2e-67 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.002G012900 [exp] 220 / 3e-67 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10034283 pacid=23175926 polypeptide=Lus10034283 locus=Lus10034283.g ID=Lus10034283.BGIv1.0 annot-version=v1.0 ATGACCAAGAAATGGACAGGGGAAGAAGGAGCGGATCTGGACCGGCGAGCCAAATGGTGGTACTCAACTTTCCACTCCGTCACTGCGATGATTGGTGCCG GTGTCCTCGGCCTCCCCTCTGCCATGGCTTACTTGGGATGGGGTCCAGGGGCAATGATGCTAGTCGTGTCATGGTGCCTGACCCTGAACACGATGTGGCA GATGATCCAGCTCCACGAATGCGTCGAGGGGACTCGATTCGACCGGTACATAGACCTAGGACGGCATGCCTTTGGGAAGAAGCTAGGACCCTGGATCGTT CTGCCTCAACAGCTGATAGTGGAGGTTGGGTGTAACATAGTGTACATGGTGACTGGTGGGCAGTGTCTGAAGAAGTTTATGCAGATTGCTTGTTCCAGCT GCACCCCTCTCAAACAATCTTATTGGATTCTCATCTTTGGTGGCATTCACTTCTTCCTCTCTCAGCTCCCCAACTTCAACTCCGTCGCCGGCGTCTCTCT TGCTGCCGCTGTCATGTCTCTCTGCTACTCAACAATAGCGTGGGTGGGTTGCTTGAGCCACGGAAGAGGGCTTGATGTGAGCTACGAGTACGACAAAACA AGCCCAGCAAACTCAGTGTTCAGAGTGTTCAACGCGCTGGGTTCAATCTCGTTCGCGTTTGCAGGGCACGCGGTGGCGTTGGAGATACAGGCCACCATCC CTTCAACCCCGGAGAAGCCTTCGAGGATTCCGATGTGGAAAGGTGCTCTGAGTGCTTATTTTGTGAACGCCGTGTGCTATTTCCCGGTGGCCTTCATAGG CTACTGGGCTTTCGGGAAAGACGTCAATGACAACGTGCTTATCGACCTCCGTAGGCCCGCTTGGCTCATTGCCTCCGCTAACCTCATGGTTGTCGTCCAC GTCATCGGCAGCTACCAGGTGTATGCGATGCCAGTTTTTGGCTTGCTGGAAGGGACGATGACTAAAAAATTCAACGTTCCTCCTGGGTTGCTTCTTAGAC TTTTGGTCCGATCAGCTTATGTTGGTAAGTGA
AA sequence Show only first row Show all	>Lus10034283 pacid=23175926 polypeptide=Lus10034283 locus=Lus10034283.g ID=Lus10034283.BGIv1.0 annot-version=v1.0 MTKKWTGEEGADLDRRAKWWYSTFHSVTAMIGAGVLGLPSAMAYLGWGPGAMMLVVSWCLTLNTMWQMIQLHECVEGTRFDRYIDLGRHAFGKKLGPWIV LPQQLIVEVGCNIVYMVTGGQCLKKFMQIACSSCTPLKQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAAVMSLCYSTIAWVGCLSHGRGLDVSYEYDKT SPANSVFRVFNALGSISFAFAGHAVALEIQATIPSTPEKPSRIPMWKGALSAYFVNAVCYFPVAFIGYWAFGKDVNDNVLIDLRRPAWLIASANLMVVVH VIGSYQVYAMPVFGLLEGTMTKKFNVPPGLLLRLLVRSAYVGK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	0	1
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10039873 [exp]	1.7	0.9883
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Lus10003363 [exp]	2.0	0.9859
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Lus10022399 [exp]	2.0	0.9787
AT3G52480			unknown protein		Lus10004203 [exp]	3.2	0.9758
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	4.0	0.9667
					Lus10011724 [exp]	4.6	0.9812
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	6.5	0.9721
AT1G25530			Transmembrane amino acid trans...		Lus10041482 [exp]	6.7	0.9676
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	6.9	0.9717
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	8.1	0.9733

Compare expression of checked genes

Lus10034283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.