Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68550 126 / 7e-34 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT3G25890 113 / 5e-29 AP2_ERF CRF11 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) AT1G25470 78 / 3e-16 AP2_ERF CRF12 cytokinin response factor 12, AP2 domain-containing transcription factor family protein (.1.2) AT4G27950 76 / 2e-15 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT1G49120 73 / 3e-14 AP2_ERF CRF9 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) AT4G11140 72 / 3e-14 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT3G15210 70 / 9e-14 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT5G44210 69 / 9e-14 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G12890 69 / 1e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G28370 67 / 3e-13 AP2_ERF AtERF11 ERF domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041456 [exp] 487 / 7e-175 AT1G68550 146 / 3e-41 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10035018 [exp] 323 / 6e-110 AT3G25890 150 / 2e-42 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10021678 [exp] 318 / 4e-108 AT3G25890 154 / 4e-44 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027573 [exp] 81 / 5e-17 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 81 / 8e-17 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 72 / 4e-14 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10016827 [exp] 71 / 1e-13 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10033664 [exp] 68 / 3e-13 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10037487 [exp] 68 / 3e-13 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120100 [exp] 252 / 1e-82 AT3G25890 124 / 4e-33 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G125600 [exp] 241 / 5e-78 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.012G032900 [exp] 72 / 7e-14 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.001G094800 [exp] 71 / 9e-14 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.004G047600 [exp] 69 / 2e-13 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.019G131300 [exp] 69 / 3e-13 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.009G101900 [exp] 69 / 4e-13 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.007G043400 [exp] 67 / 4e-13 AT1G28370 91 / 4e-23 ERF domain protein 11 (.1) Potri.019G088000 [exp] 66 / 4e-13 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.003G071700 [exp] 69 / 6e-13 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10034316 pacid=23176100 polypeptide=Lus10034316 locus=Lus10034316.g ID=Lus10034316.BGIv1.0 annot-version=v1.0 ATGAACACATCTGCTGAAGGCTCCTTGTTGGGGTCAAAGGTTCGGAAAGTCCGTGTGATCTATCAAGATCCTTATGCCACTGATTCCAGTGACGATGAAT CAGAGCTATTCTCTGCTCAAGCTGCCAATAAGAAACCAAAGCGTTTTGTCCGTGAGATTAGCATCCCCTTGGCTGCTGCTGTTACTCCATCGAGTACTGT TGAGCAGCAATCTTCCTCTCAAGACAGCAGCAAAAGTGGTGGCAAGTCATCTTCCAGAAAGTGGCCTTCTGGTGTTAGACAAAGGAAATGGGGGAAATGG GCTGCTGAGATACGAAACCCTTTCACCAAGACCAGGACTTGGCTTGGCACTTTCAACACTCTTGAAGAGGCTTCTCATGCTTATGATACCAAGAAGCGAG AATTTGATGCCGTTGCTGCTGCTTTGGCCTCAGATGGTTCTGAGAAGAGCAAAAACTCGCCTGCTGTTGTAGCTGATGCTTCCCCGTCAGCAAGCAAGAA CAAGCCACTCCGTGGCTCTGTTACAAATGATAATGACTCTGAGAGTGCTGTGTCGCATACTTCTTCGCCAGCTTCTGTGCTCGAGTTGGATGTTTTAAGC AAGGATGAAGGTTTTGACTTGATCAACGAAGTCGGTTTGGATGGTTCGGATGCTGTTCCTTCCGTTGGTGATCTGGAGATGCCTGATTTGAGTTTCATTG ATGAGGCTTTGGGGTCGTCGTGCCCTGTTGATCAAGATCTCGACTTGGGTCTTGATTTCAGCAACATAATCGACGAGTTTGGGAGGATGTATGATGATTT CTGCGGGTTAGACGAAGGACTGGATGTCCTTGGGGTACAAGGCGACGTACCTACGGAGCTTCCAGATTATGATTTTGATTTCGGCAGTGAGGAATTTGCC TACCTTGATGATCATCATCAACAACAACCCCTCAATATTGCGTTGTGCCCATAA
AA sequence Show only first row Show all	>Lus10034316 pacid=23176100 polypeptide=Lus10034316 locus=Lus10034316.g ID=Lus10034316.BGIv1.0 annot-version=v1.0 MNTSAEGSLLGSKVRKVRVIYQDPYATDSSDDESELFSAQAANKKPKRFVREISIPLAAAVTPSSTVEQQSSSQDSSKSGGKSSSRKWPSGVRQRKWGKW AAEIRNPFTKTRTWLGTFNTLEEASHAYDTKKREFDAVAAALASDGSEKSKNSPAVVADASPSASKNKPLRGSVTNDNDSESAVSHTSSPASVLELDVLS KDEGFDLINEVGLDGSDAVPSVGDLEMPDLSFIDEALGSSCPVDQDLDLGLDFSNIIDEFGRMYDDFCGLDEGLDVLGVQGDVPTELPDYDFDFGSEEFA YLDDHHQQQPLNIALCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10034316 [exp]	0	1
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10018085 [exp]	4.5	0.8859
AT4G00525			unknown protein		Lus10030386 [exp]	5.3	0.8537
AT4G24800		ECIP1	EIN2 C-terminus Interacting Pr...		Lus10042080 [exp]	5.5	0.8484
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	7.9	0.8501
AT1G28260			Telomerase activating protein ...		Lus10014007 [exp]	11.0	0.8692
AT3G53630			unknown protein		Lus10024421 [exp]	11.5	0.8651
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10005518 [exp]	13.8	0.8622
AT3G45300		IVDH, ATIVD, IV...	isovaleryl-CoA-dehydrogenase (...		Lus10036122 [exp]	14.5	0.8661
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10009847 [exp]	16.2	0.8455
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10034317 [exp]	17.7	0.8196

Compare expression of checked genes

Lus10034316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.