Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68320 255 / 6e-84 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 236 / 1e-76 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 205 / 8e-65 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 204 / 4e-64 MYB AtMYB2 myb domain protein 2 (.1) AT5G49620 200 / 3e-62 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G27810 195 / 3e-61 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT3G06490 194 / 2e-59 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT5G40350 188 / 1e-58 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 178 / 6e-55 MYB ATMYB57 myb domain protein 57 (.1) AT3G30210 167 / 5e-50 MYB ATMYB121 myb domain protein 121 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041435 [exp] 516 / 0 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10037818 [exp] 223 / 1e-70 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10009037 [exp] 220 / 1e-70 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10017096 [exp] 217 / 3e-69 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 209 / 3e-66 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 205 / 3e-64 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10022259 [exp] 197 / 1e-61 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 184 / 4e-57 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 182 / 3e-56 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122100 [exp] 281 / 9e-94 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 265 / 2e-87 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.015G046200 [exp] 248 / 2e-80 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.012G055600 [exp] 246 / 6e-80 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.008G101400 [exp] 222 / 1e-70 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 222 / 2e-70 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.002G191800 [exp] 205 / 4e-64 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.014G117000 [exp] 204 / 6e-64 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.017G071500 [exp] 192 / 8e-61 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 189 / 2e-59 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034338 pacid=23175853 polypeptide=Lus10034338 locus=Lus10034338.g ID=Lus10034338.BGIv1.0 annot-version=v1.0 ATGAGAGCACCCTTTATGAATCTGCAGGCTCATGGAGGAAATCATGAAGAGGAAAGCAGTGATCAGAATCATTCAGAGGTAAGGAGAGGCCCTTGGACAC TTGAAGAAGACACTCTACTCTCCCATTACATTGCTAGACATGGCGAAGGCCGCTGGAACATGTTGGCCAAATGTGCTGGATTGAAGAGGACTGGGAAGAG CTGCAGGCTGAGATGGCTGAATTATTTGAAACCAGACATTAAAAGAGGAAACTTAACTCCAAAAGAGCAGCTTCTGATCTTGGAACTTCATTCCAAGTGG GGTAACAGGTGGTCGAGGATAACGCAACATCTACCAGGAAGAACAGACAACGAGATAAAGAACTACTGGAGGACAAGGGTGCAGAGGCAAGCTAGGCAGC TCAACATTGAATCCAACAGCAAGCTGTTCCTTGATGCTGTGAGGTGTTACTGGGTTCCAAGGCTCCTTCAGAAAGTTGAGCAGCAAACTAACTACTCACC ACCACAACAACAACAAGAAGAAATAGAAACTCAGCATCCAATAACCAAAGTGGTTGCTCCTGATGATTCTGCTGCTTCTCAGGAAGTAGAAGTAGAAGAA ACCAACTTGTCGAATTCAGCTTCAATCATTGCGCATTCCACGGATTCGACGACAATCTCCTACTATGATCAGCAGCAGCAGCAGCCGCCTTCTGAGAACG TCATGGAATCTGAATTGATTGGCTTCCCCATGGAGTACAACTACTACAATAGCAGCAACATGATGATGCTGAATTACGACTATGGGATGGATGGGTTTGA TGATACCATTGCTCCTGCCTTAATGTGCCATGAGAATAACACTGTTGACGGTGAGATTAATAATAATCCAGAAATAATGTCAGCAGTTTCAGAACAGGAA TGGCAGATGGGGGACAACAGCTACTATGATTCTCTGTGGAACTTGGATGACACGTGGCAGTACAGGGGCATAAGAGAAGAAATGGGCATCTAG
AA sequence Show only first row Show all	>Lus10034338 pacid=23175853 polypeptide=Lus10034338 locus=Lus10034338.g ID=Lus10034338.BGIv1.0 annot-version=v1.0 MRAPFMNLQAHGGNHEEESSDQNHSEVRRGPWTLEEDTLLSHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPKEQLLILELHSKW GNRWSRITQHLPGRTDNEIKNYWRTRVQRQARQLNIESNSKLFLDAVRCYWVPRLLQKVEQQTNYSPPQQQQEEIETQHPITKVVAPDDSAASQEVEVEE TNLSNSASIIAHSTDSTTISYYDQQQQQPPSENVMESELIGFPMEYNYYNSSNMMMLNYDYGMDGFDDTIAPALMCHENNTVDGEINNNPEIMSAVSEQE WQMGDNSYYDSLWNLDDTWQYRGIREEMGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	0	1
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	3.0	0.7141
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	4.0	0.7349
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	7.7	0.7009
AT4G30410			sequence-specific DNA binding ...		Lus10015500 [exp]	10.6	0.7020
AT3G45070			P-loop containing nucleoside t...		Lus10034079 [exp]	12.2	0.7620
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	14.3	0.6996
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Lus10005592 [exp]	18.7	0.6703
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	20.1	0.6948
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	36.7	0.6648
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	42.7	0.6662

Compare expression of checked genes

Lus10034338 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.