Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 655 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 622 / 0 Transmembrane amino acid transporter family protein (.1) AT3G56200 372 / 1e-125 Transmembrane amino acid transporter family protein (.1) AT2G40420 344 / 9e-115 Transmembrane amino acid transporter family protein (.1) AT1G80510 333 / 8e-110 Transmembrane amino acid transporter family protein (.1) AT4G38250 94 / 2e-20 Transmembrane amino acid transporter family protein (.1) AT2G42005 76 / 8e-15 Transmembrane amino acid transporter family protein (.1) AT2G41190 74 / 5e-14 Transmembrane amino acid transporter family protein (.1) AT2G39130 68 / 7e-12 Transmembrane amino acid transporter family protein (.1) AT3G54830 55 / 8e-08 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005099 [exp] 921 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 814 / 0 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 811 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 556 / 0 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 536 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 523 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 400 / 1e-136 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 396 / 5e-135 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10034093 [exp] 353 / 1e-117 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 756 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 733 / 0 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 548 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 405 / 2e-138 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 370 / 9e-127 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 334 / 6e-110 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 322 / 2e-105 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 80 / 2e-17 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 80 / 4e-16 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.009G167900 [exp] 80 / 5e-16 AT4G38250 583 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10034353 pacid=23175940 polypeptide=Lus10034353 locus=Lus10034353.g ID=Lus10034353.BGIv1.0 annot-version=v1.0 ATGACGATTGGGAACTTCGGTCCAAAGAAGGATAGGAAATCAAGGAAGGGGAAACAGCCCGTAGATGAAAATGCTCCCTTACTTCCCAAGAAGCACGAGG AGGGTAGTTTTGACGAGTTCAATGGAGCTTCTTTCTCCGGGGCTGTCTTCAATTTGTCAACCACAATTGTTGGTGCTGGGATTATGGCATTACCTGCCAC CTTGAAAGTTCTAGGCCTTATCCTTGGGATTGCCATGATCATCTTCATGGCTTTTCTGGCACAGGCTTCAGTCGACTTGCTGATTAAGTTCACCCGTGTA AGCAAGTGTTCATCTTATGGCGGACTTATGGGGGATAGCTATGGAAAGATTGGGAAAATAGTGCTGCAAGTTGCTGTGATGATCAACAACATAGGTGTAC TCATTGTATACATGATAATCCTTGGTGATGTGCTGTCTGGAACAAGCGCTGATGGAGTTCATCACCCTGGTGTTCTCGAAGGATGGTTTGGAGTACAATG GTGGAACGGACGTACCTCTGTACTGCTCCTCATAACATTCGCCATATTTGCCCCCCTCGCCTCTCTGAAGCGAATCGACTCTTTAAGATATACATCGGCA CTCTCAGTTGCACTTGCAGTAGTATTCATTTTTATCACCATGGGGATTACAATTGTGAAGCTGATAAATGGAAGCATAATGATGCCCAGATTGCTCCCTG ATGTCACTAATATGTCATCATTTTGGAACCTCTTCACTATCGTTCCTGTTCTTGTCACTGCATACATCTGCCACTACAATGTTCACAGCATAGACAACGA ACTAGTGGATTCAACCCAGATAACCTCAGTGGTGCGAACATCACTTGCTCTGTGTTCATTAGTGTACATAATGACAAGTGTTTTTGGATTCCTTCTATTC GGGGATTCAACTCTTGACGATGTGTTGGCCAACTTCAACACGGACCTCGGCATCCCATATAGCTCACTGCTCAACGATGCAGTTCGTGTCAGCTACGCAG CTCATCTGATGCTTGTCTTTCCAGTCGTCTTCCACCCGTTGCGCCTCAACTTGGACGGGCTCTTGTTCCCCTCATCAAAGCCTTTGTACCAGGACAACTG CCGGTTTGCATCCATCACCATAGCTCTCATATCTGTGATCTTCTTGGGCGCAAATTTCATCCCGAGCATCTGGGATGCTTTCCAGTTCACCGGAGCAACC GCTGCTGTTTGCCTTGGGTTCATCTTCCCAGCTGCCATTACCCTCAGGGACCGGCACTATATTGCGACATCGAAGGACAAGATGCTGTGCGTGTTCATGA TTGTGCTAGCAGTGTTTGCGAATGCTGTGGCCATATACAGCGACGCTTATGCATTGATTAAGAGGAACTCGTCGCCTATCGTTGGATGA
AA sequence Show only first row Show all	>Lus10034353 pacid=23175940 polypeptide=Lus10034353 locus=Lus10034353.g ID=Lus10034353.BGIv1.0 annot-version=v1.0 MTIGNFGPKKDRKSRKGKQPVDENAPLLPKKHEEGSFDEFNGASFSGAVFNLSTTIVGAGIMALPATLKVLGLILGIAMIIFMAFLAQASVDLLIKFTRV SKCSSYGGLMGDSYGKIGKIVLQVAVMINNIGVLIVYMIILGDVLSGTSADGVHHPGVLEGWFGVQWWNGRTSVLLLITFAIFAPLASLKRIDSLRYTSA LSVALAVVFIFITMGITIVKLINGSIMMPRLLPDVTNMSSFWNLFTIVPVLVTAYICHYNVHSIDNELVDSTQITSVVRTSLALCSLVYIMTSVFGFLLF GDSTLDDVLANFNTDLGIPYSSLLNDAVRVSYAAHLMLVFPVVFHPLRLNLDGLLFPSSKPLYQDNCRFASITIALISVIFLGANFIPSIWDAFQFTGAT AAVCLGFIFPAAITLRDRHYIATSKDKMLCVFMIVLAVFANAVAIYSDAYALIKRNSSPIVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10034353 [exp]	0	1
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10019729 [exp]	40.1	0.7754
					Lus10018905 [exp]	41.6	0.7730
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10029615 [exp]	47.9	0.7597
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	77.8	0.7569
AT5G25770			alpha/beta-Hydrolases superfam...		Lus10011694 [exp]	90.2	0.7429
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Lus10013109 [exp]	112.4	0.7389
AT2G03810			18S pre-ribosomal assembly pro...		Lus10019193 [exp]	119.8	0.7381
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10008447 [exp]	127.7	0.7477
AT3G14470			NB-ARC domain-containing disea...		Lus10026109 [exp]	142.0	0.7279
AT3G60800			DHHC-type zinc finger family p...		Lus10032199 [exp]	158.0	0.7192

Compare expression of checked genes

Lus10034353 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.