Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30210 184 / 9e-58 MYB ATMYB121 myb domain protein 121 (.1) AT3G24310 178 / 1e-55 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT4G13480 178 / 1e-55 MYB ATMYB79 myb domain protein 79 (.1) AT3G46130 157 / 1e-47 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 155 / 4e-47 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT1G25340 155 / 3e-46 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G68320 153 / 1e-45 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT3G27810 150 / 4e-45 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 148 / 1e-44 MYB ATMYB24 myb domain protein 24 (.1) AT1G08810 150 / 2e-44 MYB ATMYB60 myb domain protein 60 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005079 [exp] 361 / 4e-128 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Lus10023711 [exp] 184 / 2e-57 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 182 / 1e-56 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10005886 [exp] 155 / 8e-47 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10009037 [exp] 149 / 2e-44 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10041435 [exp] 150 / 6e-44 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009522 [exp] 149 / 1e-43 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10038062 [exp] 148 / 1e-43 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10022259 [exp] 147 / 1e-43 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G118000 [exp] 207 / 8e-68 AT3G30210 209 / 1e-67 myb domain protein 121 (.1) Potri.004G115600 [exp] 203 / 3e-66 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.017G099500 [exp] 198 / 4e-64 AT3G30210 199 / 1e-63 myb domain protein 121 (.1) Potri.010G064000 [exp] 182 / 2e-57 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.008G173400 [exp] 182 / 3e-57 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.009G027300 [exp] 155 / 9e-47 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.008G122100 [exp] 153 / 2e-45 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.001G235500 [exp] 151 / 2e-45 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.017G071500 [exp] 149 / 3e-45 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.019G045900 [exp] 152 / 6e-45 AT1G08810 298 / 5e-101 myb domain protein 60 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10034372 pacid=23176107 polypeptide=Lus10034372 locus=Lus10034372.g ID=Lus10034372.BGIv1.0 annot-version=v1.0 ATGATGATGAGGGGTTACGGGGTTGATGAGCAAGGATGGAGGAAAGGGCCATGGACTCCTCAAGAGGACAAGTTGCTTACTGAATATGTCAACCTCCATG GTGAAGGAAGGTGGAGCTCTGTTTCTAAATCCACTGGACTGAAGAGGAGTGGGAAGAGCAGCAGGCTGAGGTGGGTGAATTACCTGAGGCCAGGGCTTAA GAGAGGCCAACTAACACCTCAGGAGGAAGGGATTGTGATAGAACTCCATGCTGTTTGGGGGAACAAGTGGTCAACTATAGCAAGTTATCTACCCGGAAGG ACCGACAACGAGATAAAGAACTACTGGAGAACCCATTTCAAGAAAAGATCTTCTTCTTCTTCTTCATTGCCTCGCAATCCGAAGCGAAGAAAGTCATCAT CAGCCGTTACCAACGACCAGCAGACGATCAATATTCATGCAAACCACTCGTCGGGCCATGATAGTTGTACTATTGATCATGATCAGAAGATGCAGCTGGA CACATTATTATTGACCGACGGCAATTGCCAGAAGCAGCAGCAATCTTGCTCAGGTCATAATATGAATGAGTTTGAGAATCATCAATGGGCTGATGATCAT CTGGTTCCAGCAGCAGCTTTTGGTTCTGGGACAATCATAGAGGATTCGCTGTGGAGTTGCTTGTGGAATTTCTAA
AA sequence Show only first row Show all	>Lus10034372 pacid=23176107 polypeptide=Lus10034372 locus=Lus10034372.g ID=Lus10034372.BGIv1.0 annot-version=v1.0 MMMRGYGVDEQGWRKGPWTPQEDKLLTEYVNLHGEGRWSSVSKSTGLKRSGKSSRLRWVNYLRPGLKRGQLTPQEEGIVIELHAVWGNKWSTIASYLPGR TDNEIKNYWRTHFKKRSSSSSSLPRNPKRRKSSSAVTNDQQTINIHANHSSGHDSCTIDHDQKMQLDTLLLTDGNCQKQQQSCSGHNMNEFENHQWADDH LVPAAAFGSGTIIEDSLWSCLWNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30210	MYB	ATMYB121	myb domain protein 121 (.1)		Lus10034372 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016861 [exp]	1.0	0.9144
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	1.4	0.8041
AT5G09220		AAP2	amino acid permease 2 (.1)		Lus10027109 [exp]	2.8	0.7198
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10027816 [exp]	3.7	0.7231
AT3G05950			RmlC-like cupins superfamily p...		Lus10041900 [exp]	4.0	0.7622
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024367 [exp]	6.3	0.7037
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	8.1	0.7633
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	14.0	0.6813
AT1G17800		AtENODL22	early nodulin-like protein 22 ...		Lus10020984 [exp]	14.5	0.7273
AT2G29040			Exostosin family protein (.1)		Lus10016532 [exp]	21.0	0.7307

Compare expression of checked genes

Lus10034372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.