Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 277 / 2e-88 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G66350 206 / 3e-61 GRAS RGL1 RGA-like 1 (.1) AT3G03450 197 / 2e-57 GRAS RGL2 RGA-like 2 (.1) AT5G17490 196 / 4e-57 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 186 / 4e-53 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 181 / 2e-51 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G63100 171 / 4e-47 GRAS GRAS family transcription factor (.1) AT5G48150 162 / 7e-45 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 158 / 6e-44 GRAS SCL21 SCARECROW-like 21 (.1) AT1G50600 161 / 1e-43 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005078 [exp] 746 / 0 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10019773 [exp] 279 / 2e-89 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 274 / 5e-88 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 271 / 2e-86 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10024177 [exp] 271 / 4e-86 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 268 / 3e-85 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10041540 [exp] 222 / 1e-65 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 221 / 1e-64 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10006322 [exp] 204 / 7e-60 AT1G63100 588 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208700 [exp] 476 / 2e-167 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.001G023500 [exp] 279 / 2e-89 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.003G202100 [exp] 279 / 3e-89 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 278 / 3e-89 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.001G326000 [exp] 211 / 8e-62 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G125200 [exp] 206 / 4e-60 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 198 / 3e-57 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G122400 [exp] 194 / 2e-55 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.010G110700 [exp] 192 / 3e-55 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 192 / 3e-55 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10034374 pacid=23175971 polypeptide=Lus10034374 locus=Lus10034374.g ID=Lus10034374.BGIv1.0 annot-version=v1.0 ATGCCATTGCAAAAGCCAGACGTGACCCTTTCCCTCACTCTATCCCCCTCCTCCGCCGCCGCACCTAGACTGAGCTCCGAGCAAAGAGGCATCCGCCTCA TCGAACTCCTCCTCAAATGCGCCGCCCACGCCTCCGGAAACCTCGACCTCGCCGATGCTTTCCTCTCCGAGATATCCACTCTCGCCTCGATCTCCGGCGA CTCCATGCAGCGGTTGGCAGCTCGGTTTGCCTCTGCACTCGCCACGCGCCTCCTTACTAACCGCTGGCCTGGAATTTACACTGCCCTCAATCACACGCGC GATCACGCGCCTCCACATGATGTGGCCATTCAATTACGACGTCGTAGCCTCTTCTCCCAAGCTTTTCCTTACTTGAGCTTCACGTATGCCATCATTGCCC GGACCTTGCTCCAAGTCATGACCCATGAACAAGCTGTCCACCTAGTTGATCTCGAGTCGGGGGACTCGAAATTGTGGGTCCCCCTCCTGAGAAGCTTTGC CAGGCTGTCCAATGGATATCCGCACTTGATGATCAAGGTGACTTGTGTCTCAAGTAATGGAAGTGTGTTGGAGAAGCTAGGGCAGCAGCTTGTCAAGGAG GCGGAGGTTCTTGGACTTAGCTTCCAATTTGTTCCCTTGAAGATCACGATGCAGGATCTTCGTCCGGGTATGATCAATGTCATGTCCGGGGAAGCCCTAG CATTTATCTCTGTGTTGAACCTTCATGTTCTTCTAGCAAAAGAGGATGGCGATCAAAATATTGATCCATCGAAATTTGGTGGAAGGCACATAGGAGATTT CCTAGGGATGATCCGGTCAATGTCGCCCAAGGCATTGTTTGTAGTGGAGCAAGAGGCTAACCATAACTCAAACCGATTGGTTGACCGGGTAGTGGAGGGT TTGCATTATTACAGCGCAGTGTTTGACTCGATAGATTCAACATTTGGAATCGGGACAAGCGAGCAGGAGGAACGTACTATGATGGAGGAGATGTTCGGAG ATGAGATTGAGAACATGGTGGCATGTGAAGGGGTTGAGAGGGTGGAGAGGCATGAGAAGTATTCAAAATGGGCGATGAGGATGTCCAGAGCCGGGTTTAG ACCGGTTCGAATGTGGTATAGCTCGGACGAAGAGGCCAAACAAATGGTGGATACTTTTGGTAAGGTAGGGTACAAAATTGTGAGTGATAGAACAAGTATG ATGATTTGTTGGCATGATCGTCCTTTGTATGCTCTAACTGCGTGGACTTGTGCTGACCAATTGATTGATTGA
AA sequence Show only first row Show all	>Lus10034374 pacid=23175971 polypeptide=Lus10034374 locus=Lus10034374.g ID=Lus10034374.BGIv1.0 annot-version=v1.0 MPLQKPDVTLSLTLSPSSAAAPRLSSEQRGIRLIELLLKCAAHASGNLDLADAFLSEISTLASISGDSMQRLAARFASALATRLLTNRWPGIYTALNHTR DHAPPHDVAIQLRRRSLFSQAFPYLSFTYAIIARTLLQVMTHEQAVHLVDLESGDSKLWVPLLRSFARLSNGYPHLMIKVTCVSSNGSVLEKLGQQLVKE AEVLGLSFQFVPLKITMQDLRPGMINVMSGEALAFISVLNLHVLLAKEDGDQNIDPSKFGGRHIGDFLGMIRSMSPKALFVVEQEANHNSNRLVDRVVEG LHYYSAVFDSIDSTFGIGTSEQEERTMMEEMFGDEIENMVACEGVERVERHEKYSKWAMRMSRAGFRPVRMWYSSDEEAKQMVDTFGKVGYKIVSDRTSM MICWHDRPLYALTAWTCADQLID

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10034374 [exp]	0	1
AT3G53250			SAUR-like auxin-responsive pro...		Lus10009219 [exp]	1.7	0.9513
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030460 [exp]	1.7	0.9457
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	5.3	0.9332
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	6.3	0.9462
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	6.3	0.9442
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037663 [exp]	7.7	0.9259
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	8.8	0.9230
AT3G08030			Protein of unknown function, D...		Lus10016394 [exp]	9.5	0.9433
					Lus10038768 [exp]	11.2	0.8994
AT1G28290		AGP31	arabinogalactan protein 31 (.1...		Lus10025526 [exp]	13.6	0.9345

Compare expression of checked genes

Lus10034374 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.