Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 907 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 827 / 0 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 652 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 632 / 0 LAC11 laccase 11 (.1) AT5G01190 604 / 0 LAC10 laccase 10 (.1) AT5G58910 590 / 0 LAC16 laccase 16 (.1) AT1G18140 578 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G30210 552 / 0 LAC3 laccase 3 (.1) AT2G40370 544 / 0 LAC5 laccase 5 (.1) AT5G05390 534 / 0 LAC12 laccase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019122 [exp] 1109 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034614 [exp] 1044 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10024378 [exp] 848 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 823 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 679 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 658 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10017175 [exp] 649 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 642 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10032894 [exp] 641 / 0 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054600 [exp] 964 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 962 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 935 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 932 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 929 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 920 / 0 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.006G087100 [exp] 863 / 0 AT5G60020 802 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 858 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.009G034500 [exp] 845 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 835 / 0 AT2G29130 831 / 0.0 laccase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10034439 pacid=23175873 polypeptide=Lus10034439 locus=Lus10034439.g ID=Lus10034439.BGIv1.0 annot-version=v1.0 ATGGCGGAAACCGCAATGTTGTTGTTCCTAGCAGTCATCTGTTTGGTTGGTGGTTTCGCCGATGGGGCCATAACCACCAGGCACTACAAGCTTGATGTGG TGCAGAAAAACGTCACACGGCTCTGTCACAGTAAGAGCATGGTGATTGTGAACGGGCAGTTTCCGGGGCCTAGGATTGTGGCCAGGGAAGGGGACCGCCT TCTTATCGAAGTGGTCAACCATGTCAGTCACAACATCTCGATCCATTGGCATGGGATCCGGCAACTTCGAAGTGGGTGGGCGGACGGACCTGCGTACATA ACCCAATGTCCCATCCAGACAGGGCAGAGTTATGTTTACAACTACACGATAGTAGGGCAAAGAGGCACCCTCTGGTGGCACGCTCACATCTCGTGGCTCA GATCGACGGTTTACGGTCCCCTCATTATACTCCCAAAGCTTGGTGTACCTTACCCTTTCAAGAAACCTTACAAAGAAGTTCCCATTGTATTTGGGGAGTG GTTTAATGCGGATACTGAAGCAATCATCAACCAGGCCATGCAAACAGGTGGAGGTCCAAATGTCTCTGATGCATACACCATTAATGGACTTCCAGGACCT TTCTATAACTGCTCTGCCAAAGACACATTCAAGCTGAAGGTGAAGCCTGGAAAGACGTACATGTTGCGCCTAATCAACGCTGCCCTCAATGACGAGCTCT TCTTCAGCATCGCAAACCACACCCTCACCGTAGTGGAAGCAGACGCGGTTTATGTGAAGCCATTCGAAACAGACGTTATCCTCATAGCTCCAGGCCAAAC CACAAACGTTCTGCTGAAAGCCAAGCCACATCACCCCAACGCCACATTTCTCATGTTGGCTTCCCCATATGCGACCGGCCAGGGCACTTTCGACAACTCA ACAGTAGCTGGAATCATGGAATATGATGAATCTCCCCAACATTCTCCTATCAAAAGTCTCCCAGTCTTCAAACCAACCTTGCCTGCTCTCAATGACACTG CGTTCGCCACAAACTTCACCCGCAAGCTTCGCAGTTTGGGAACCAAACAGTTCCCAGCCAACCTTCCGCAGCAGGTGGATAGGCAGTTCTTCTTCACCGT AGGGTTAGGAACCAACCCTTGCCCAAAGAACCGAACCTGCCAGGGACCCAACGGGACAATGTTCGCAGCATCGGTCAACAACGTATCGTTCGCGATGCCA ACCACGGCTTTGCTCCAATCACATTACTCCGGTCAATCACACGGTGTGTATTCTCCTTACTTCCCCATCAGCCCTTTGATTCCTTTCAACTACACGGGAA CCCCGCCAAACAATACAATGGTCAGCAACGGCACCAAGCTAGTGGTGTTACCTTTCAACACGAGAGTGGAGCTGATAATGCAGGACACCAGCATTCTCGG TGCCGAGAGCCACCCTCTCCATTTGCACGGATTCAACTTCTTTGTGGTTGGTCAAGGTTTCGGAAACTTCGACTCTGCTAAAGACCCTGCGAAGTTCAAT CTTGTAGACCCTGTTGAGAGGAATACTGTTGGAGTACCGCCCGGAGGGTGGGTTGCAATCAGGTTCCTGGCTGATAACCCGGGAGTATGGTTCATGCATT GCCATCTGGAGGTTCACACAAGTTGGGGTCTGAAGATGGCTTGGGTTGTTTTGGATGGGAAGCTCCCTAACCAGAAGTTGCTTCCCCCACCTGCTGATCT TCCCAAGTGCTAA
AA sequence Show only first row Show all	>Lus10034439 pacid=23175873 polypeptide=Lus10034439 locus=Lus10034439.g ID=Lus10034439.BGIv1.0 annot-version=v1.0 MAETAMLLFLAVICLVGGFADGAITTRHYKLDVVQKNVTRLCHSKSMVIVNGQFPGPRIVAREGDRLLIEVVNHVSHNISIHWHGIRQLRSGWADGPAYI TQCPIQTGQSYVYNYTIVGQRGTLWWHAHISWLRSTVYGPLIILPKLGVPYPFKKPYKEVPIVFGEWFNADTEAIINQAMQTGGGPNVSDAYTINGLPGP FYNCSAKDTFKLKVKPGKTYMLRLINAALNDELFFSIANHTLTVVEADAVYVKPFETDVILIAPGQTTNVLLKAKPHHPNATFLMLASPYATGQGTFDNS TVAGIMEYDESPQHSPIKSLPVFKPTLPALNDTAFATNFTRKLRSLGTKQFPANLPQQVDRQFFFTVGLGTNPCPKNRTCQGPNGTMFAASVNNVSFAMP TTALLQSHYSGQSHGVYSPYFPISPLIPFNYTGTPPNNTMVSNGTKLVVLPFNTRVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNFDSAKDPAKFN LVDPVERNTVGVPPGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWVVLDGKLPNQKLLPPPADLPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	0	1
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	1.7	0.9683
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029980 [exp]	2.0	0.9654
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	2.2	0.9489
AT5G46220			Protein of unknown function (D...		Lus10023312 [exp]	4.6	0.9591
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	8.5	0.9455
AT5G02640			unknown protein		Lus10009066 [exp]	8.9	0.9435
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	9.2	0.9351
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10019122 [exp]	10.6	0.9495
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	11.5	0.9158
AT1G63120		ATRBL2	RHOMBOID-like 2 (.1)		Lus10017840 [exp]	12.4	0.9423

Compare expression of checked genes

Lus10034439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.