Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20340 189 / 4e-62 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) AT1G76100 180 / 1e-58 PETE1 plastocyanin 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004155 [exp] 221 / 8e-75 AT1G20340 221 / 8e-75 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Lus10005628 [exp] 199 / 1e-66 AT1G76100 190 / 4e-63 plastocyanin 1 (.1) Lus10021839 [exp] 191 / 8e-64 AT1G20340 170 / 2e-55 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G246100 [exp] 192 / 2e-63 AT1G20340 192 / 3e-63 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1) Potri.002G016000 [exp] 192 / 3e-63 AT1G20340 185 / 1e-60 PLASTOCYANIN 2, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00127 [flax] [poplar] Copper-bind Copper binding proteins, plastocyanin/azurin family
Representative CDS sequence Show only first row Show all	>Lus10034554 pacid=23162835 polypeptide=Lus10034554 locus=Lus10034554.g ID=Lus10034554.BGIv1.0 annot-version=v1.0 ATGTCCACTGCGACCTCCTCCGCCGCCGTGACTATCCCATCCTTCACCGGCCTCAAGGCAGCCAACAAGGCGACCAACGCCACCGCCAAGGTTTCCGCCG CCCCCAAATTCGGCGGAGTAAGGGCATCAATGAAGGATTTTGGTGTGGCTCTAGTTGCCACGGCCGCATCAGCAGTGCTGGCAAGCAACGCCATGGCGAT CGAGGTATTGCTCGGTGGAGATGACGGGTCGTTAGCATTTGTGCCGAACAAGTTCTCCATAGCAGCTGGGGAGACAATTACTTTCAAGAACAACGCTGGG TTCCCTCACAACATCGTTTTCGACGAGGATGAGGTACCGAGCGGAGTGGACGTGTCAAAGATCTCAATGTCGGAGGAGGATCTGTTGAATGCACCAGGGG AGACTTACAAAGTTGCTTTGACCGAGAAAGGAGAATACTCTTTCTACTGCTCTCCTCACCAGGGCGCTGGCATGGTCGGCAAAGTCATTGTTAACTGA
AA sequence Show only first row Show all	>Lus10034554 pacid=23162835 polypeptide=Lus10034554 locus=Lus10034554.g ID=Lus10034554.BGIv1.0 annot-version=v1.0 MSTATSSAAVTIPSFTGLKAANKATNATAKVSAAPKFGGVRASMKDFGVALVATAASAVLASNAMAIEVLLGGDDGSLAFVPNKFSIAAGETITFKNNAG FPHNIVFDEDEVPSGVDVSKISMSEEDLLNAPGETYKVALTEKGEYSFYCSPHQGAGMVGKVIVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	0	1
AT1G18060			unknown protein		Lus10041995 [exp]	1.0	0.9369
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	1.7	0.9264
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10004380 [exp]	4.2	0.9207
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	4.5	0.9246
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	4.9	0.9258
AT3G63540			Mog1/PsbP/DUF1795-like photosy...		Lus10016419 [exp]	5.9	0.9205
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	6.5	0.9281
AT3G20680			Domain of unknown function (DU...		Lus10006345 [exp]	7.2	0.8969
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	7.3	0.9118
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	7.7	0.9101

Compare expression of checked genes

Lus10034554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.