Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 873 / 0 SKS5 SKU5 similar 5 (.1) AT1G41830 862 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 786 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 777 / 0 SKS7 SKU5 similar 7 (.1) AT4G38420 744 / 0 SKS9 SKU5 similar 9 (.1) AT4G22010 734 / 0 SKS4 SKU5 similar 4 (.1) AT4G28090 674 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 608 / 0 SKS17 SKU5 similar 17 (.1) AT3G13400 572 / 0 SKS13 SKU5 similar 13 (.1) AT1G55570 571 / 0 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021832 [exp] 1046 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 944 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 934 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10035282 [exp] 755 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 752 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 729 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10015545 [exp] 723 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10022648 [exp] 701 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1) Lus10023977 [exp] 690 / 0 AT5G63810 822 / 0.0 beta-galactosidase 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G247700 [exp] 912 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 910 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 845 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G227600 [exp] 782 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 765 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 749 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.007G038300 [exp] 640 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 576 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 575 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.003G224100 [exp] 568 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10034560 pacid=23162904 polypeptide=Lus10034560 locus=Lus10034560.g ID=Lus10034560.BGIv1.0 annot-version=v1.0 ATGCTGCGGGTATCTCACTCCTTCCTCCTACTAGCTGCCATTGCCGCCGTGTTCTCCCTCGTCGGAGCCGAAGATCCCTACCGTTTCTTCGAGTGGAATG TCACTTACGGCGACATTTACCCCCTCGGAGTCCGCCAAACGGGGATTCTGATCAACGGCCAGTTCCCGGGTCCGGATATCCATTGCGTTACGAATGACAA CCTAATCATCAATGTCCACAACAGCTTGGACGAACCTTTCCTTCTTTCTTGGAATGGGATGCAGCAGAGGAGAAATTCATTCGTGGATGGCGTTTACGGG ACCACGTGTCCAATCCCGCCGGGCAGAAATTACACTTACATTCTCCAAGCTAAGGATCAGATTGGCAGCTTCTACTACTTCCCTTCCCTGGGATTCCACA AGGCCGCTGGTGGGTTTGGAGGCATCAGAATCCTCAGCCGTCCCAGGATTCCCGTCCCGTTTGCTGATCCCGACGGCGACTACACCGTTCTCATCGGAGA TTGGTACAAGACCAATCACACGGATTTGCAAGCTCAATTGGATGGTGGCCACAAGCTGCCTCTAACTGATGGCATCCTCATCAATGGTCGCGGATCTAAT GGATACAGTCTCACCGTCAATCAAGGCAAGACCTACAGGCTGAGGATTTGCAATGCTGGGTTGCAAAACTCGTTGAACTTCCGCATCCAGAACCACAAGA TGAAGTTGGTCGAAGTGGAAGGAACCCACACCCTCCAGACCACCTATTCCTCACTCGACGTCCACCTCGGCCAATGTTACTCCGTCCTGTTCACGGCCGA CCAGCCCGGCCAAGATTATTACATCGTTGCTTCATCGCGATGGACAACCCCAGTGATCACTTCCACCGGCGTTCTGCACTACAGCAACTCTGCCGGCCCA GTTTCTGGCCCGCCTCCTGGTGGCCCAACCAATCAGGTCGATTGGTCCCTCAATCAGGCCCGCTCAATCAGGACTAACCTGACGGCAAGTGGGCCGAGGC CGAATCCACAAGGCTCATACCACTATGGTATGATCAATTTGACTAGGACAATTGTTCTGGCTAACATGGCGGGTCAAGTGAGCGGCAAGCAGAGATACTC GGTCAACAGCGTGTCGTTTATTCCAGCGGACACTCCTTTGAAGCTTGCTGACTACTTCAAAATCCCAGGGGTGTTCAAGGAGAATGGGATCTCGGACAGA CCGACCGGTGGAGGTATCTACCTTGACACCTCTGTCTTGACCACAGCCTACAGAACCTTCATCGAGATTGTGTTCCAAAACAACGAGGACATCGTCCAGA GTTGGCATCTTGATGGATACAGCTTCTGGGTCGTCGGTATGGATGGCGGACCGTGGTCAACTGCCAGTAGGAATCAGTACAATCTAAGGGATGCCGTTTC TAGATGCACTACTCATGTTTATCCAAACGCATGGACTGCAATCTACATTGCACTAGACAACGTTGGAATGTGGAACTTGAGGACAGAGTACTGGGCGAGG CAATACCTTGGCCAACAGTTCTACTTGAGGGTTTTCACAACATCTACTTCACTGCGTGACGAGTACCCAATTCCTAAGAACGCACGTCTTTGCGGCAGAG CTGCCGGCAGACGCACACGACCGATGTAA
AA sequence Show only first row Show all	>Lus10034560 pacid=23162904 polypeptide=Lus10034560 locus=Lus10034560.g ID=Lus10034560.BGIv1.0 annot-version=v1.0 MLRVSHSFLLLAAIAAVFSLVGAEDPYRFFEWNVTYGDIYPLGVRQTGILINGQFPGPDIHCVTNDNLIINVHNSLDEPFLLSWNGMQQRRNSFVDGVYG TTCPIPPGRNYTYILQAKDQIGSFYYFPSLGFHKAAGGFGGIRILSRPRIPVPFADPDGDYTVLIGDWYKTNHTDLQAQLDGGHKLPLTDGILINGRGSN GYSLTVNQGKTYRLRICNAGLQNSLNFRIQNHKMKLVEVEGTHTLQTTYSSLDVHLGQCYSVLFTADQPGQDYYIVASSRWTTPVITSTGVLHYSNSAGP VSGPPPGGPTNQVDWSLNQARSIRTNLTASGPRPNPQGSYHYGMINLTRTIVLANMAGQVSGKQRYSVNSVSFIPADTPLKLADYFKIPGVFKENGISDR PTGGGIYLDTSVLTTAYRTFIEIVFQNNEDIVQSWHLDGYSFWVVGMDGGPWSTASRNQYNLRDAVSRCTTHVYPNAWTAIYIALDNVGMWNLRTEYWAR QYLGQQFYLRVFTTSTSLRDEYPIPKNARLCGRAAGRRTRPM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10034560 [exp]	0	1
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10042767 [exp]	3.5	0.8660
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10029736 [exp]	5.1	0.8615
AT3G01810			unknown protein		Lus10041590 [exp]	6.0	0.8497
AT4G23900			Nucleoside diphosphate kinase ...		Lus10003878 [exp]	7.4	0.8258
AT1G64650			Major facilitator superfamily ...		Lus10017322 [exp]	9.2	0.8491
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	9.5	0.8410
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10037180 [exp]	13.3	0.8354
AT4G30020			PA-domain containing subtilase...		Lus10001310 [exp]	15.0	0.8234
AT1G04910			O-fucosyltransferase family pr...		Lus10032603 [exp]	16.5	0.8249
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	17.2	0.8300

Compare expression of checked genes

Lus10034560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.