Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50250 749 / 0 FTSH1 FTSH protease 1 (.1) AT5G42270 731 / 0 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 408 / 1e-134 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 407 / 2e-134 FTSH8 FTSH protease 8 (.1) AT5G15250 403 / 1e-132 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G26140 338 / 1e-107 FTSH4 FTSH protease 4 (.1) AT2G29080 337 / 5e-106 FTSH3 FTSH protease 3 (.1) AT5G53170 333 / 1e-104 FTSH11 FTSH protease 11 (.1) AT1G07510 329 / 5e-103 FTSH10 FTSH protease 10 (.1) AT3G47060 307 / 9e-95 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021824 [exp] 764 / 0 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10012277 [exp] 759 / 0 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10016003 [exp] 754 / 0 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 408 / 9e-135 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 408 / 2e-133 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 344 / 1e-108 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 337 / 2e-106 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10038819 [exp] 316 / 1e-98 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 317 / 2e-98 AT5G53170 1087 / 0.0 FTSH protease 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 752 / 0 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 746 / 0 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 416 / 9e-138 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 405 / 4e-133 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 404 / 5e-133 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.006G227700 [exp] 332 / 2e-105 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.009G033600 [exp] 332 / 4e-104 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.015G020700 [exp] 327 / 3e-102 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.016G099800 [exp] 326 / 8e-102 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.012G000700 [exp] 317 / 2e-98 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10034572 pacid=23162914 polypeptide=Lus10034572 locus=Lus10034572.g ID=Lus10034572.BGIv1.0 annot-version=v1.0 ATGGCGTCCGCTCTCTCCTCCAACCCTCTACTCTCTTCCACTATCTTCTCCAAATCCCACATCCTAATTTCCCCTCCAACTCCCAAAACCACCAAATCCC CATTCCATCTCCCACCAAAATCTCGACCTTGCCGCGCTATATTGAGAAAGCAATCCGATTCCGAATCCAATTCCACCTCAAACTCATTCCCTTCCCGAGC TACACTAGCTGCTGCTCTCCTCTTCTCTTCACTAACCCCACAAGCTCTCGCCCTCGACAACTCTCCTCCGCCTCTGACTCAGCCAATTGTAATAGAAGCT CAGCCCACTAAACCTTCTTCCCCAAATTCCCCTTTCGCCCAGAACCTCCTCCTCACAGCTCCAAAGCCTCAATCCCAACCGGCCTCCGACCTCCCTGAAG GAACCCAATGGCGCTACAGCGAGTTCTTAAACGCGGTCAAGAAAGGGAAAATAGAGCGGGTTCGATTCAGCAAAGACGCCGAGAAACCGCTCCTGGCAGG AGCCGTGGCCGGAGAAGCGGGGACTCCTTTCTTCTCCTGCGCTGCTTCGGAGTTCGTGGAGCTGTTTGTCGGGGTTGGAGCTTCGAGGGTTAGGGATTTG TTTGAGAAGGCAAAGTCGAAAGCTCCTTGCATTGTGTTCATCGACGAGATTGATGCTGTAGGGAGGCAGAGAGGGGCTGGAATGGGTGGTGGAAATGACG AAAGAGAGCAGACTATTAATCAGCTGTTGACAGAAATGGATGGGTTTTCGGGGAATTCCGGGGTGATCGTCTTGGCTGCTACGAATCGGCCTGATGTTCT TGATTCGGCTCTGTTGAGGCCTGGGGGGGTTGATAGGCAAGTGACTGTTGATAGGCCTGATGTTTCTGGCAGAGTCAAGATTCTTCAGGTGCATTCGAGA GGGAAGGCACTTGGAAAAGATGTGGACTTTGAAAAGATTGCACGGAGAACTCCCGGTTTTACTGGAGCCGATCTGCAGAATCTGATGAACGAAGCAGCCA TTCTTGCAGCTAGGCGTGACCTTAAGGAAATAAGCAAAGATGAGATATCTGATGCTCTGGAGAGGATTATTGCAGGACCAGAGAAGAAGAACGCTGTGGT TTCCGAGGAGAAGAAAAAGCTAGTTGCCTATCATGAGGCTGGACATGCTTTGGTTGGCGCTCTGATGCCTGAATATGATCCCGTGGCCAAGATTTCCATC ATTCCTCGTGGACAGGCTGGCGGACTTACGTTCTTCGCTCCAAGCGAGGAACGGCTCGAGTCTGGGCTGTACAGCAGAAGCTACCTGGAGAATCAGATGG CTGTAGCACTTGGAGGAAGAGTGGCGGAAGAAGTGATATTCGGACAAGAAAATGTGACAACAGGGGCATCTAACGACTTCATGCAAGTTTCGAGAGTGGC AAGGCAAATGGTTGAGAGATTCGGGTTCAGCAAGAAAATCGGCCAAGTGGCTATCGGTGGAGGTGGTGGTGGAAACCCCTTCTTGGGCCAACAGATGTCG TCGCAGAAAGATTACTCAATGGCAACTGCGGATGTTGTGGACGCAGAGGTGAGGGAGCTGGTGGAGAAGGCTTACGAAAGGGCCACGGAAATCATAACGA CCCACATTGATATATTGCACAAGCTGGCTCAACTTCTGATAGAGAAGGAAACAGTGGATGGGGAAGAGTTCATGAGTCTCTTCATTGATGGAAAAGCTGA GCTTTATGTTGCTTGA
AA sequence Show only first row Show all	>Lus10034572 pacid=23162914 polypeptide=Lus10034572 locus=Lus10034572.g ID=Lus10034572.BGIv1.0 annot-version=v1.0 MASALSSNPLLSSTIFSKSHILISPPTPKTTKSPFHLPPKSRPCRAILRKQSDSESNSTSNSFPSRATLAAALLFSSLTPQALALDNSPPPLTQPIVIEA QPTKPSSPNSPFAQNLLLTAPKPQSQPASDLPEGTQWRYSEFLNAVKKGKIERVRFSKDAEKPLLAGAVAGEAGTPFFSCAASEFVELFVGVGASRVRDL FEKAKSKAPCIVFIDEIDAVGRQRGAGMGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGGVDRQVTVDRPDVSGRVKILQVHSR GKALGKDVDFEKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISI IPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGGGGGNPFLGQQMS SQKDYSMATADVVDAEVRELVEKAYERATEIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELYVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10034572 [exp]	0	1
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10021824 [exp]	1.4	0.9774
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001054 [exp]	2.4	0.9710
AT1G28140			unknown protein		Lus10034291 [exp]	2.6	0.9517
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	2.8	0.9688
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Lus10001420 [exp]	3.0	0.9709
AT1G71500			Rieske (2Fe-2S) domain-contain...		Lus10009471 [exp]	5.5	0.9633
AT2G37240			Thioredoxin superfamily protei...		Lus10014017 [exp]	7.4	0.9394
AT4G36530			alpha/beta-Hydrolases superfam...		Lus10041763 [exp]	7.7	0.9309
AT3G54050		HCEF1	high cyclic electron flow 1 (....		Lus10021115 [exp]	9.5	0.9558
AT4G02920			unknown protein		Lus10029640 [exp]	9.5	0.9411

Compare expression of checked genes

Lus10034572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.