Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23090 953 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 820 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT3G51895 728 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 644 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G22150 640 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 625 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 620 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT5G19600 590 / 0 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 538 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 535 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035897 [exp] 819 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 817 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 785 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10035896 [exp] 758 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10019389 [exp] 725 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 687 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10043247 [exp] 685 / 0 AT3G15990 789 / 0.0 sulfate transporter 3;4 (.1) Lus10039364 [exp] 676 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10041111 [exp] 659 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111700 [exp] 1046 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 1016 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.003G056200 [exp] 832 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 811 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G082700 [exp] 730 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 721 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 709 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 705 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 676 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 661 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10034603 pacid=23162798 polypeptide=Lus10034603 locus=Lus10034603.g ID=Lus10034603.BGIv1.0 annot-version=v1.0 ATGGATCCAATTACCACTAGCAATAGCAACAACAACAACAACAAAAATGATGATGACATAGAAATGATGAGTGCCAAATCATCATGTGATCCCATGGAAG AACAAGAAGAAGGGAAAACAGTGAGGACATCTTCCATGTCCATGGAACATGTACACAGAGTAGCTCCACCACCCCATAGAAACACTTTCCAAAAATTTGG TTCTAGGCTCAAGGAGACCTTGTTCCCTGATGATCCACTTCGCCAGTTCAAAGGCCAACCCTCCAACAAGAAATGGATCCTTGCTTCTCAGTATCTCTTC CCCATCCTCCAATGGGGTCCTAACTACTCCTTCTCCCTCTTCAAATCTGATGTTGTCTCTGGCCTCACCATTGCCAGCTTAGCCATCCCACAGGGTATTA GCTATGCGAAGCTGGCGAACTTGCCACCAATCGTGGGGTTGTACTCGAGCTTCGTGCCTCCGTTGGTGTATGCAGTGTTGGGGAGCTCAAGGGATCTAGC AGTTGGGCCAGTGTCTATTGCTTCACTCATTTTGGGATCCATGCTTAGCCAACAAGTGTCTCCATCTCAAGACCCTCTCTTGTTCCTTCAGCTTGCCTTC TCTTCCACTTTCTTTGCAGGCCTAATCCAGGCCTCTTTAGGATTCCTAAGGCTAGGGTTTATAATTGATTACCTATCAGAGGCAACGCTGATAGGGTTCA TGGCTGGAGCAGCCATCATAGTGTCACTACAACAGCTGAAGAGCTTGCTTGGTATAACTCATTTCACTAAGCAAATGGGGATTGTTCCTGTTTTGTCCTC AGTATTCCACCATATCAACGAGTGGTCATGGGAGACCATACTTATGGGTTTCTGCTTCCTCGTCATCCTTCTTATTTCAAGACATGTGAGCATCAAAAGA CCAAAGCTGTTCTGGGTATCAGCTGGAATGCCACTAGCATCAGTCATCCTCTCAACTGTCTTAGTCTTTGCCTTCAAAGCTCAGAACCATGGCATCACCA TTATTGGGCAACTGCAAGAAGGACTCAATCCTCCATCATGGAACATGTTGCATTTCCATGGTGCCTACATTGGCCTTGTCCTCAAAACTGGCCTCGTCAC CGGCATCATCTCCCTCACCGAAGGGATAGCGGTGGGGAGGACATTTGCGGTGCTGAAGAACTACAAGGTCGACGGGAACAAGGAGATGATGGCGATCGGG ATCATGAACATCGTCGGTTCCTCCACTTCTTGCTACGTCACCACCGGGGCTTTCTCCCGATCCGCCGTCAACCACAACGCTGGCTGCAAGACCGCCGTCT CCAATATTGTCATGTCTGTCACCGTCATGGTCACCCTCCTCTTCCTCATGCCGTTGTTTCAGTACACCCCCAACGTCGTACTCGGCGCCATCATCGTCAC CGCCGTCATAGGCCTAATTGACGTCCCCGCCGCCGTCAGGGTCTGGCGGATCGACAAGTTCGATTTCTTGGTCATGATGTCTTCCTTCCTCGGAGTCGTA TTCGTCTCCGTCCAACAAGGCCTTGCCATTGCGGTGGGAATGTCAATATTCAGGATACTACTGCAAGTGACAAGACCAACTACAATGGAATTGGGAAGCA TCCCAGGGACAAACATCTACAGAAATCTTCATCACTACAAGGATTCTGTTAGGGTTCCTGGTTTCCTCATCTTATCTATCCAATCTCCCATCAATTTCGC CAATACTAACTATCTCAAAGAAAGGATTATGAGATGGATAGCAGATTATGAAGTAGACATTAAGGAAGAGGGAATCAAGAGACATCCAACAACTACTCCT CTCCATTATGTGATCCTCGACTTGTCAGCTGTGAATGCCATAGACACAACTGGGATTTCACTCTTCAAGGACCTGCAGAAAGCATTGGGACTCAAAGGAG TTGAGCTTGTGGTGGTGAATCCCATAGGGGAGGTGATTGAAAAGCTGGAAAGAGCAGATAATAATGAAGAAGGTGGAAGCAGCAGCATTCTGAGGGCAGA TTTGGTTTACTTGACAATTGGAGAAGCTGTGTCTCAGCTCTCTACAGCCCTCAATTTCAAGATGATGATGATGCTGATGTAG
AA sequence Show only first row Show all	>Lus10034603 pacid=23162798 polypeptide=Lus10034603 locus=Lus10034603.g ID=Lus10034603.BGIv1.0 annot-version=v1.0 MDPITTSNSNNNNNKNDDDIEMMSAKSSCDPMEEQEEGKTVRTSSMSMEHVHRVAPPPHRNTFQKFGSRLKETLFPDDPLRQFKGQPSNKKWILASQYLF PILQWGPNYSFSLFKSDVVSGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYAVLGSSRDLAVGPVSIASLILGSMLSQQVSPSQDPLLFLQLAF SSTFFAGLIQASLGFLRLGFIIDYLSEATLIGFMAGAAIIVSLQQLKSLLGITHFTKQMGIVPVLSSVFHHINEWSWETILMGFCFLVILLISRHVSIKR PKLFWVSAGMPLASVILSTVLVFAFKAQNHGITIIGQLQEGLNPPSWNMLHFHGAYIGLVLKTGLVTGIISLTEGIAVGRTFAVLKNYKVDGNKEMMAIG IMNIVGSSTSCYVTTGAFSRSAVNHNAGCKTAVSNIVMSVTVMVTLLFLMPLFQYTPNVVLGAIIVTAVIGLIDVPAAVRVWRIDKFDFLVMMSSFLGVV FVSVQQGLAIAVGMSIFRILLQVTRPTTMELGSIPGTNIYRNLHHYKDSVRVPGFLILSIQSPINFANTNYLKERIMRWIADYEVDIKEEGIKRHPTTTP LHYVILDLSAVNAIDTTGISLFKDLQKALGLKGVELVVVNPIGEVIEKLERADNNEEGGSSSILRADLVYLTIGEAVSQLSTALNFKMMMMLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23090		SULTR3;3, AST91	sulfate transporter 91 (.1)		Lus10034603 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10028175 [exp]	1.7	0.8907
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Lus10000879 [exp]	4.5	0.8590
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	10.1	0.8757
					Lus10035928 [exp]	12.0	0.8216
AT5G66440			unknown protein		Lus10042306 [exp]	12.2	0.8694
AT5G01850			Protein kinase superfamily pro...		Lus10025236 [exp]	13.6	0.8261
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	17.3	0.8578
AT1G61600			Protein of unknown function (D...		Lus10030977 [exp]	18.2	0.8523
AT1G54520			unknown protein		Lus10001794 [exp]	19.9	0.8267
AT2G13810		EDTS5, ALD1	eds two suppressor 5, AGD2-lik...		Lus10020959 [exp]	21.9	0.8311

Compare expression of checked genes

Lus10034603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.