Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60020 900 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 816 / 0 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 639 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G03260 620 / 0 LAC11 laccase 11 (.1) AT5G01190 605 / 0 LAC10 laccase 10 (.1) AT5G58910 580 / 0 LAC16 laccase 16 (.1) AT1G18140 567 / 0 LAC1, ATLAC1 laccase 1 (.1) AT2G30210 551 / 0 LAC3 laccase 3 (.1) AT2G40370 543 / 0 LAC5 laccase 5 (.1) AT5G05390 534 / 0 LAC12 laccase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034439 [exp] 1044 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10019122 [exp] 1036 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10024378 [exp] 833 / 0 AT5G60020 853 / 0.0 laccase 17 (.1) Lus10010850 [exp] 804 / 0 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10035517 [exp] 665 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 652 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10023189 [exp] 640 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10017175 [exp] 639 / 0 AT2G38080 875 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10002227 [exp] 636 / 0 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G054600 [exp] 961 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 954 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 931 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.011G120200 [exp] 927 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.011G120300 [exp] 924 / 0 AT5G60020 875 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 920 / 0 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 848 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.006G087100 [exp] 841 / 0 AT5G60020 802 / 0.0 laccase 17 (.1) Potri.009G034500 [exp] 840 / 0 AT2G29130 844 / 0.0 laccase 2 (.1) Potri.009G156600 [exp] 832 / 0 AT2G29130 831 / 0.0 laccase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10034614 pacid=23162885 polypeptide=Lus10034614 locus=Lus10034614.g ID=Lus10034614.BGIv1.0 annot-version=v1.0 ATGTTGTTCCTAGCAGTGATATGTTTGCTTGCATTTGCCGAGTCAGGACATGCCGCCACAAGGCACTATAAGCTCGATGTAATGCAACAAAATGTGACGC GGCTGTGCCACACGAAGACCATGGTGACCGTGAATGGACAGTTTCCGGGGCCTAGGATCGTGGCCAGGGAAGGCGATCGGCTTCTTATCAAAGTGGTCAA TCATGTCAGTAACAATATCTCGATCCACTGGCATGGGATCCGACAGCTTAGAAGCGGGTGGGCAGACGGGCCTGCGTACATAACCCAGTGTCCTGTTCAG ACAGGGCAAAGCTATGTTTACAACTACACGATAGTAGGCCAAAGAGGCACCCTTTGGTGGCATGCACACATCTCGTGGCTCAGATCAACTGTTTATGGTC CCCTCATCATCCTCCCAAAGCTTGGTGTCCCTTACCCTTTCAAGAAACCTTACAAAGAAGTTCCCATAGTCTTTGGGGAGTGGTTTAATGCAGCTACTGA AGCAATCATCAACCAGGCCATGCAAACCGGTGGAGGTCCGAATGTCTCCAATGCATACACCATTAATGGACTCCCAGGACCTTTATATAACTGCTCTGCC AAAGACACATTCAAGCTGAAGGTGAAGCCAGGAAAGACGTACATGTTGCGCCTAATCAACGCTGCCCTGAACGATGAGCTCTTCTTCAGCATTGCAAACC ACACCCTCACAGTGGTCGAAGCCGATGCAGTTTACGTGAAGCCATTCAACACAGACGTCATCCTCATAGCTCCAGGACAAACCACGAATGTTCTGCTGAA AGCCAAGCCGCATCACCCTGACGCCACATTTCTCATGTTGGCTTCCCCGTACGCGACTGGCCAAGGCACTTTCGACAACTCGACAGTTGCTGGAATCATG GAATATGATGATGAATCCCCTTCTTCTATGAAAAGTCTCCCAGTCTTCAAACCAACCTTACCGGCTCTCAACGACACTGCCTTTGCCACAAACTTCACCG ACAAGCTTCGCAGTCTGGGAACCAAACAGTTCCCAGCCAATGTTCCACAACAGGTGGATAGGCAGTTCTTCTTTACAGTTGGGTTAGGAACCAACCCTTG CCCGAAGAACAGAACCTGCCAGGGACCCAACGGAACGATGTTTGCAGCATCGGTCAACAATGTTTCGTTCGCAATGCCAACCACGGCTTTGCTCCACGCA CATTACACCAGTCAATCACATTCCGTGTATTCTCCTTACTTCCCCATCAGCCCTTTGATTCCTTTCAACTACACAGGAAACCCACCAAACAATACAATGG TAGGAAACGGCACGAAGCTAGTGGTGTTACCTTTCAATACAAGCGTGGAGCTGATAATGCAGGACACGAGCATTCTTGGTGCTGAGAGCCATCCTCTTCA TTTGCATGGATTCAACTTCTTTGTCGTCGGTCAGGGTTTCGGAAACTGCGACCATGTTAAAGATCCTGCAAAGTTCAATCTTGTTGACCCTGTTGAGAGG AACACTGTCGGAGTGCCGCCCGGTGGGTGGGTTGCGATTCGGTTCCTGGCTGACAACCCGGGAGTGTGGTTCATGCATTGCCATTTAGAAGTTCATACAA GTTGGGGTCTCAAGATGGCATGGATTGTTTTGGATGGAAAGCTCCCTAGCCAGAAGCTGCTCTCCCCACCAGCTGACCTTCCCAAGTGCTAA
AA sequence Show only first row Show all	>Lus10034614 pacid=23162885 polypeptide=Lus10034614 locus=Lus10034614.g ID=Lus10034614.BGIv1.0 annot-version=v1.0 MLFLAVICLLAFAESGHAATRHYKLDVMQQNVTRLCHTKTMVTVNGQFPGPRIVAREGDRLLIKVVNHVSNNISIHWHGIRQLRSGWADGPAYITQCPVQ TGQSYVYNYTIVGQRGTLWWHAHISWLRSTVYGPLIILPKLGVPYPFKKPYKEVPIVFGEWFNAATEAIINQAMQTGGGPNVSNAYTINGLPGPLYNCSA KDTFKLKVKPGKTYMLRLINAALNDELFFSIANHTLTVVEADAVYVKPFNTDVILIAPGQTTNVLLKAKPHHPDATFLMLASPYATGQGTFDNSTVAGIM EYDDESPSSMKSLPVFKPTLPALNDTAFATNFTDKLRSLGTKQFPANVPQQVDRQFFFTVGLGTNPCPKNRTCQGPNGTMFAASVNNVSFAMPTTALLHA HYTSQSHSVYSPYFPISPLIPFNYTGNPPNNTMVGNGTKLVVLPFNTSVELIMQDTSILGAESHPLHLHGFNFFVVGQGFGNCDHVKDPAKFNLVDPVER NTVGVPPGGWVAIRFLADNPGVWFMHCHLEVHTSWGLKMAWIVLDGKLPSQKLLSPPADLPKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	2.2	0.9538
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015242 [exp]	2.2	0.9145
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	3.2	0.9509
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	3.5	0.9335
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000957 [exp]	7.7	0.8708
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	7.9	0.9358
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	8.1	0.8651
AT4G23690			Disease resistance-responsive ...		Lus10017538 [exp]	8.3	0.8534
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Lus10001043 [exp]	8.7	0.8496
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Lus10003142 [exp]	12.4	0.8957

Compare expression of checked genes

Lus10034614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.