Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 198 / 6e-63 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 193 / 5e-61 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G51680 192 / 5e-60 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 191 / 1e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 190 / 1e-59 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 187 / 2e-58 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 186 / 4e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 183 / 2e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 183 / 6e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 177 / 1e-54 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035258 [exp] 495 / 1e-179 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 346 / 5e-121 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004908 [exp] 321 / 4e-111 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 317 / 2e-109 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 293 / 8e-100 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 288 / 6e-98 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 270 / 1e-90 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 269 / 1e-90 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 264 / 2e-88 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 281 / 4e-95 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 280 / 1e-94 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 276 / 2e-93 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 268 / 3e-90 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 266 / 2e-89 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 263 / 2e-88 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 259 / 1e-86 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 241 / 2e-79 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 234 / 6e-77 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 231 / 1e-75 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034626 pacid=23162774 polypeptide=Lus10034626 locus=Lus10034626.g ID=Lus10034626.BGIv1.0 annot-version=v1.0 ATGTCTTCTTCCCAGGAGCAAATTTCCAAGAGGCTACAAGGCAAGGTTGCTTTGATCACCGGCGGCGCCAGCGGCATAGGCGCCTGTGCCGCTAAGCTCT TCGCCCAAAACGGAGCCAAAGTCACCATCGCCGACGTCCAGTCCGACTTGGGCCACTCCGTCGCCGAAGAAATCAGCTCCATCTCCCCTTACCCAGTCAC TTATGTCCAATGCGATGTCTCCAACGAATCAGACGTCCAGACCGCTATAGACGGTGTCGTATCGGCCCACGGGAAGCTGGACATCATGTACAGCAACGCG GGAATCATGGGGAAACTTACCGGGATGCAGATCCTGACCGCGGACAGTCAGGATTTCGCTAGGGTGCTGGAAGTCAACGTTAAGGGATCGTTCCACTGTG CTAAACACGCAGCTAGAGTGATGGTTCCGCAGAAACGTGGGACCATCCTCTTCACTGCGAGCAGCGTGACCGAGACTTACGGAAATGCCCCTCACGCTTA CACAGCCTCGAAGGCTGCGGTGGTTGGGCTAATGAAGAATCTGTGTGTGGAATTGGGGGCCCACGGGATCCGGGTCAACTCGATTTCTCCTGACGGAGTT CCCACTCCAATGGCTATGAATGCGATGGGAATGGATCGAAAGGCGATTCAAGCGTTGGGTTCGCAGAGGGCGAGTTTGAAGGGTACGGTTCTGGACGAAA ACGACATCGCAGAGGCGGCTCTGTACTTGGCAAGTGAGGAATCCAAGTTCGTTAGTGGCCTGAACCTTGTGGTGGATGGCGGGTACAACTTGAAGAGTGC CTAA
AA sequence Show only first row Show all	>Lus10034626 pacid=23162774 polypeptide=Lus10034626 locus=Lus10034626.g ID=Lus10034626.BGIv1.0 annot-version=v1.0 MSSSQEQISKRLQGKVALITGGASGIGACAAKLFAQNGAKVTIADVQSDLGHSVAEEISSISPYPVTYVQCDVSNESDVQTAIDGVVSAHGKLDIMYSNA GIMGKLTGMQILTADSQDFARVLEVNVKGSFHCAKHAARVMVPQKRGTILFTASSVTETYGNAPHAYTASKAAVVGLMKNLCVELGAHGIRVNSISPDGV PTPMAMNAMGMDRKAIQALGSQRASLKGTVLDENDIAEAALYLASEESKFVSGLNLVVDGGYNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10034626 [exp]	0	1
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10033633 [exp]	2.4	0.9930
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10019460 [exp]	4.5	0.9926
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10019459 [exp]	4.5	0.9896
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	6.2	0.9864
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	7.7	0.9908
					Lus10014508 [exp]	8.5	0.9904
AT5G43440			2-oxoglutarate (2OG) and Fe(II...		Lus10022192 [exp]	10.2	0.9888
					Lus10024872 [exp]	11.6	0.9861
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10002357 [exp]	12.0	0.9893
AT4G23690			Disease resistance-responsive ...		Lus10024715 [exp]	12.4	0.9845

Compare expression of checked genes

Lus10034626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.