Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 723 / 0 BAT1 bidirectional amino acid transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035260 [exp] 831 / 0 AT2G01170 667 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10039616 [exp] 412 / 6e-137 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10028561 [exp] 410 / 7e-136 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 121 / 2e-29 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119100 [exp] 825 / 0 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.008G125100 [exp] 806 / 0 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.007G100700 [exp] 412 / 6e-137 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078100 [exp] 409 / 2e-135 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 293 / 6e-93 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 260 / 3e-79 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10034628 pacid=23162717 polypeptide=Lus10034628 locus=Lus10034628.g ID=Lus10034628.BGIv1.0 annot-version=v1.0 ATGGCGACTAGTAATACTGGTTCCATTAGGAGGTTTGTGGAAGACCCCTCCGCCGCCGCTGCCGGCCCGTACTTGCCTCTCGCCGACGACGAAGATGACA ACCGGCTGAATCAGCTGGGTTACAAGCAGGAACTCCGTCGCAGTCTCTCGGCGCTTTCAAGTTTTGCGACGACCTTCAATATCGTATCAGTGATCACCGG GATCACCACGTTATACGAAATGGGCCTGAGTTTCGGCGGGCCTGTGACCATGGTCTACGGGTGGCCGGTAGTGGGCTGCATGACACTATTAGTGGGCCTG TCGATGGCAGAGATTTGTTCAGCGTATCCGACTTCGGGTGGGCTTTACTTCTGGAGTGCCAAGCTCTGTGGCAACCACTGGGGGCCTTTCGCTGCCTGGC TTACTGGCTGGAGAGGGGAGAGAATCCAATTCCATTTCTTCATTGAATTTCAGATTCTCTCAATTCGGAATCTTCTTTCACCATTTCATTCACACTCCTT CTCCGGTCAACCCAACATGGTCTCCGCCGTCGATATAGACGGTGCCGGCGGCTCTCTAGATTCCGGCACCTCCCGCCTCCGGGAGCTCGGCTACAAGCAA GAGCTCAAGCGTGACCTCTCGGTGTTCTCGAATTTCGCGTTTTCGTTCTCGATAATCTCGGTCCTGACCGGGATAACCACCCTTTACAACACCGGGTTGA CCTTCGGAGGTCCGGTATCGTTGTTGTATGGATGGTTCATAGCCGGGTTGTTCACCATGTTTGTCGGGTCGGCAATGGGGGAGATTTGCTCCGCTTACCC GACCTCCGGTGGTCTCTACTACTGGAGCGCTATGCTCGCCGGCCCTTCTTGGGCCCCTTTTGCTTCTTGGATCACTGGCTGGTTCAATATTGTTGGCCAG TGGGCTGTTACAACTAGCGTTGATTTTTCGCTAGCACAGATGATCCAGGTGATCATTCTCCTTAGTACAGGCGGCAAGAATGGTGGTGGATACGAGGCAT CAAAGTATGTAGTCATTGCTATCTATGCGGGTATCCTCTTCCTGCATGCTCTTATGAACAGCCTTCCCATTTCTTTGCTGTCCTTTTTCGGGCAGCTCGC TGCAGCTTGGAATCTGTTAGGTGTTCTTCTTCTGACGATACTCATCCCAACTGTGGCGACCGAGAGAGCGAGTTCGGAGTTTGTTTTCACACACTTCAAT ACTGATAACGGGGATGGGATTAACAACAAGCTTTACATCTTTGTTCTTGGTCTTCTGATGAGCCAGTACACCCTTACAGGATATGATGCATCTGCTCATA TGACGGAGGAAACGAAAAATGCAGACAAGAACGGTCCAAAGGGGATAATAAGCGCGATCGGGATATCAGTGATATTTGGATGGTTGTACATACTTGGAAT CACATATGCAGTCACAGACATCCCTTCTCTTCTGAGTAAAAACAATGACGCCGGTGGATATGCCATTGCTGAAATATTTTACCAAGCATTTAAGAGAAGG TATGGCAGTGGAGTTGGAGGGATCATTTGCTTAGGTGTGATTGCTGTTGCCATCTTCTTCTGTGGTATGAGTTCAGTAACTAGCAACTCCAGGATGGCTT ATGCATTCTCCAGAGATGGAGCCATGCCATTCTCGTCGCTATGGCACAAAGTAAACAACCAAGAAGTTCCAATCAATGCCGTCTGGCTCTCTGTCGTCAT ATCTTTCTGCATGGCATTAACGTATCTTGGAAGTACAGTGGCATTCCAGGCCATGGTGTCTATAGCAACCATTGGGCTATACATAGCATACGCATTCCCA ATCTTCTTCAGGGTGACCTTGGCTCGCAAGACGTTTGTACGAGGGCCGTTCCATTTGGGTGTTTACGGTGATCTAGTTGGTTGGATTGCTGTCATATGGG TGGTAACAATCTCAGTCCTCTTCTCATTGCCAGTAGCATACCCAATCACCATTGAGAATCTGAACTACACGCCAGTAGCAGTGGGGGGTTTGTTTCTGAT AGTTGTTTCGGGATGGGTTTTCAGTGCTAGGAAGTGGTTTAAAGGTCCTGTAACCAATGTAACTGTATAG
AA sequence Show only first row Show all	>Lus10034628 pacid=23162717 polypeptide=Lus10034628 locus=Lus10034628.g ID=Lus10034628.BGIv1.0 annot-version=v1.0 MATSNTGSIRRFVEDPSAAAAGPYLPLADDEDDNRLNQLGYKQELRRSLSALSSFATTFNIVSVITGITTLYEMGLSFGGPVTMVYGWPVVGCMTLLVGL SMAEICSAYPTSGGLYFWSAKLCGNHWGPFAAWLTGWRGERIQFHFFIEFQILSIRNLLSPFHSHSFSGQPNMVSAVDIDGAGGSLDSGTSRLRELGYKQ ELKRDLSVFSNFAFSFSIISVLTGITTLYNTGLTFGGPVSLLYGWFIAGLFTMFVGSAMGEICSAYPTSGGLYYWSAMLAGPSWAPFASWITGWFNIVGQ WAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAIYAGILFLHALMNSLPISLLSFFGQLAAAWNLLGVLLLTILIPTVATERASSEFVFTHFN TDNGDGINNKLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKNGPKGIISAIGISVIFGWLYILGITYAVTDIPSLLSKNNDAGGYAIAEIFYQAFKRR YGSGVGGIICLGVIAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSLWHKVNNQEVPINAVWLSVVISFCMALTYLGSTVAFQAMVSIATIGLYIAYAFP IFFRVTLARKTFVRGPFHLGVYGDLVGWIAVIWVVTISVLFSLPVAYPITIENLNYTPVAVGGLFLIVVSGWVFSARKWFKGPVTNVTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10034628 [exp]	0	1
AT1G10180			unknown protein		Lus10022896 [exp]	1.0	0.8819
AT1G02065	SBP	SPL8	squamosa promoter binding prot...		Lus10042882 [exp]	12.4	0.8189
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10001814 [exp]	24.1	0.7119
AT2G36200			P-loop containing nucleoside t...		Lus10022697 [exp]	24.4	0.8348
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10013915 [exp]	39.0	0.8140
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	60.8	0.7900
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10014695 [exp]	64.8	0.7597
AT3G04820			Pseudouridine synthase family ...		Lus10009188 [exp]	75.7	0.7935
AT3G59160			F-box/RNI-like superfamily pro...		Lus10003943 [exp]	79.8	0.7644
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014693 [exp]	93.9	0.7260

Compare expression of checked genes

Lus10034628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.