Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 489 / 4e-174 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 304 / 7e-102 GONST4 golgi nucleotide sugar transporter 4 (.1) AT2G13650 64 / 3e-11 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 58 / 4e-09 GONST2 golgi nucleotide sugar transporter 2 (.1) AT5G17630 49 / 3e-06 Nucleotide/sugar transporter family protein (.1) AT2G30460 42 / 0.0003 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034674 [exp] 577 / 0 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 538 / 0 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 408 / 6e-143 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10018311 [exp] 335 / 4e-114 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10017759 [exp] 332 / 1e-112 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 331 / 3e-112 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 330 / 7e-112 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10005865 [exp] 69 / 1e-12 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10024126 [exp] 67 / 4e-12 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 511 / 0 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 505 / 1e-180 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 335 / 9e-114 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.007G106400 [exp] 66 / 7e-12 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 64 / 4e-11 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G127400 [exp] 51 / 6e-07 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.009G044000 [exp] 50 / 1e-06 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.013G154800 [exp] 43 / 0.0002 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10034672 pacid=23162809 polypeptide=Lus10034672 locus=Lus10034672.g ID=Lus10034672.BGIv1.0 annot-version=v1.0 ATGTCCAGTGATATGGAAAACCACAAAGGTGCCATGGAGAAGAAACAAGTAGTAGCTTCTGTCGAGTCAACGTGGTCAACCTTTCTGGTACAAAAGACAT CACTCTACGGTGTAGCAGCAGGGTACTGCATTTCAGCATCCTTGCTATCAATCATCAACAAATGGGCAATCATGAAATTCCCTTACCCGGGAGCCCTAAC CGCTTCACAATACTCGACAAGCGCCCTCGGAGTCCTCCTATTCGGCTACTTCAAACTCCTCGACCACGACCGGGTCAGCCTCCAAACAATGTGGAAGTTC TTACCGGCTGCAATCATGTTCTACCTCTCGCTCTTCACCAACAGCGAGCTCCTGCTCCACGCCAATGTCGACACCTTCATCGTGTTCCGGTCCATGGTCC CGATCTTCGTCGCACTGGGAGAGACGCTCTTCCTGAACCAGCCGTGGCCATCTCTCAAGACGTGGATGTCACTCTCCACGATCCTCGGCGGGAGTGTGGT GTACGTGATGTCGGATTACCAATTCACCCTCACTGCTTACAGTTGGGCAGTTGCTTACTTGATCAGCATGACCGTTGACTTTGTTTATGTGAAACATGTG GTGATGACCATTGGTTTGAACACATGGGGGCTTGTGCTGTTCAACAATTTGGAAGCGCTTGTTCTGTTTCCTCTGGAGTTGGTTGTGATGGGTGAATTTC GGGAATTGAAGCGTACGGTTTCAGAGGAGACAACGGCGGACTGGTATTGTTCGTTCGAGGTAGTTTTCCCGGTCGGGTTGTCATGTTTGTTCGGTTTGGC AATATCGTTCTTCGGGTTTTCGTGCCGGAGAGCCATTTCTGCAACTGGTTTTACTGTTCTTGGTGTGGTTAACAAGCTTTTGACGGTGGGGATCAATCTG GTCATATGGGATAAGCATGCTACGTTTGTTGGGACGTTCGGGTTGCTGATTTGTATGGTGGGTGGTGTGTTGTATCAGCAATCTACAAGCCAGATCAAGA GCCAGAAGCCTGAGCCAGAATCAACGGTTAAAAGTACAATCCTGTATGAACAAGAGGAAGAAAAGCCAGTGGAAATGCAGAGTGTGGAATTTCAAGTTCC GGTATAA
AA sequence Show only first row Show all	>Lus10034672 pacid=23162809 polypeptide=Lus10034672 locus=Lus10034672.g ID=Lus10034672.BGIv1.0 annot-version=v1.0 MSSDMENHKGAMEKKQVVASVESTWSTFLVQKTSLYGVAAGYCISASLLSIINKWAIMKFPYPGALTASQYSTSALGVLLFGYFKLLDHDRVSLQTMWKF LPAAIMFYLSLFTNSELLLHANVDTFIVFRSMVPIFVALGETLFLNQPWPSLKTWMSLSTILGGSVVYVMSDYQFTLTAYSWAVAYLISMTVDFVYVKHV VMTIGLNTWGLVLFNNLEALVLFPLELVVMGEFRELKRTVSEETTADWYCSFEVVFPVGLSCLFGLAISFFGFSCRRAISATGFTVLGVVNKLLTVGINL VIWDKHATFVGTFGLLICMVGGVLYQQSTSQIKSQKPEPESTVKSTILYEQEEEKPVEMQSVEFQVPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034672 [exp]	0	1
AT5G65760			Serine carboxypeptidase S28 fa...		Lus10039645 [exp]	1.0	0.8658
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10020995 [exp]	1.4	0.8606
AT5G58610			PHD finger transcription facto...		Lus10025386 [exp]	2.4	0.8564
AT2G44220			Protein of Unknown Function (D...		Lus10036985 [exp]	4.2	0.7986
AT1G29340		ATPUB17, PUB17	ARABIDOPSIS THALIANA PLANT U-B...		Lus10029266 [exp]	15.0	0.8006
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10039554 [exp]	15.4	0.8027
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	18.7	0.8038
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10002199 [exp]	19.5	0.8543
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10000748 [exp]	20.0	0.7255
AT3G54000			unknown protein		Lus10017206 [exp]	35.3	0.7864

Compare expression of checked genes

Lus10034672 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.