Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76340 471 / 8e-168 GONST3 golgi nucleotide sugar transporter 3 (.1) AT5G19980 307 / 2e-103 GONST4 golgi nucleotide sugar transporter 4 (.1) AT4G31600 77 / 7e-16 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G13650 71 / 1e-13 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 53 / 1e-07 GONST2 golgi nucleotide sugar transporter 2 (.1) AT5G17630 50 / 7e-07 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034672 [exp] 577 / 0 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 503 / 2e-180 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 391 / 4e-137 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10017759 [exp] 324 / 4e-110 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 322 / 3e-109 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 321 / 4e-109 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 321 / 5e-109 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10024126 [exp] 69 / 8e-13 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 67 / 3e-12 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 491 / 1e-175 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 485 / 3e-173 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.018G071700 [exp] 328 / 1e-111 AT5G19980 484 / 6e-173 golgi nucleotide sugar transporter 4 (.1) Potri.006G270700 [exp] 71 / 7e-14 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.007G106400 [exp] 68 / 1e-12 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.005G062900 [exp] 66 / 7e-12 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G009400 [exp] 64 / 3e-11 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G127400 [exp] 54 / 5e-08 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.009G044000 [exp] 52 / 3e-07 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10034674 pacid=23162756 polypeptide=Lus10034674 locus=Lus10034674.g ID=Lus10034674.BGIv1.0 annot-version=v1.0 ATGCTTAATGGTGTGGAGAATCCCAAAAGCTGGTCCAGATATCTGGTAGAGAAGACGTCAGTCTACGGTTTAGCAGCAGGATACTGCATTTCAGCATCCT TGCTATCAATCATCAACAAATGGGCAGTCATGAAATTCCCTTACCCTGGAGCCCTAACGGCTTTACAGTACCTCACAAGCGTCCTAGGAGTCCTCCTATC CGGCTACTTCAAACTCCTGGACCACGACCGCCTCAACCTCCAAACAATGTTGAAATTCTTACCAGCAGCAATCATGTTCTACCTCGCACTCTTCACCAAC AGCGAGCTCTTGCTCCACGCCAATGTCGACACCTTCATCGTGTTCCGATCCATGGTCCCGATCTTCGTGGCATTCGGGGAGACACTCTTCCTGAACCAGC CGTGGCCATCTTTCAGAACATGGCTGTCACTTTCCACGATCCTCGCGGGGAGTGTGGTTTACGTGATGTCGGATTACCAATTCACCCTCACTGCTTACAG TTGGGCAGTTGCTTACTTGATCAGCATGACAGTTGACTTCGTTTATGTGAAACATGTGGTGATGACCATTGGTTTGAACACTTGGGGCCTTGTGCTGTAC AATAATATGGAAGCGCTCCTTCTGTTTCCTCTGGAGTTGGTGGTGATGGGTGAGTTTCAGGCGTTGAAGCGAACGATTTCTATGGAGAAGACGGCGGACT GGTATTGTTCGTTCGAGGTAGTTTTCCCGGTCGGGTTGTCATGTTTGTTCGGTTTGGCAATATCGTTCTTCGGGTTTTCGTGCCGGAGAGCCATTTCTGC AACTGGTTTTACTGTTCTTGGTGTGGTTAACAAGCTTTTGACGGTGGGGATCAATCTGGTTATTTGGGATAAGCATGCTACATTTGTTGGGACAGTTGGG TTGCTGATTTGTATGGCGGGTGGGGTGTTGTATCAGCAATCCACAAGCAAGAAGAAGCCTAGGGCCAACCCAGAAGCCAAGTAG
AA sequence Show only first row Show all	>Lus10034674 pacid=23162756 polypeptide=Lus10034674 locus=Lus10034674.g ID=Lus10034674.BGIv1.0 annot-version=v1.0 MLNGVENPKSWSRYLVEKTSVYGLAAGYCISASLLSIINKWAVMKFPYPGALTALQYLTSVLGVLLSGYFKLLDHDRLNLQTMLKFLPAAIMFYLALFTN SELLLHANVDTFIVFRSMVPIFVAFGETLFLNQPWPSFRTWLSLSTILAGSVVYVMSDYQFTLTAYSWAVAYLISMTVDFVYVKHVVMTIGLNTWGLVLY NNMEALLLFPLELVVMGEFQALKRTISMEKTADWYCSFEVVFPVGLSCLFGLAISFFGFSCRRAISATGFTVLGVVNKLLTVGINLVIWDKHATFVGTVG LLICMAGGVLYQQSTSKKKPRANPEAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76340		GONST3	golgi nucleotide sugar transpo...		Lus10034674 [exp]	0	1
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	1.4	0.6872
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10018825 [exp]	11.7	0.6630
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10002938 [exp]	12.7	0.6419
					Lus10019586 [exp]	13.0	0.6294
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10043203 [exp]	16.6	0.6435
AT5G18200			UTP:galactose-1-phosphate urid...		Lus10016535 [exp]	18.0	0.6002
AT5G46230			Protein of unknown function, D...		Lus10033612 [exp]	19.9	0.6516
AT5G10530			Concanavalin A-like lectin pro...		Lus10042309 [exp]	28.5	0.6483
AT1G01390			UDP-Glycosyltransferase superf...		Lus10005335 [exp]	30.8	0.6124
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	33.4	0.5700

Compare expression of checked genes

Lus10034674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.