Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 289 / 4e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 267 / 1e-74 transmembrane receptors;ATP binding (.1.2) AT1G69550 264 / 2e-73 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G44510 243 / 1e-66 TAO1 target of AVRB operation1 (.1) AT5G51630 240 / 1e-65 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G11250 239 / 2e-65 Disease resistance protein (TIR-NBS-LRR class) (.1) AT4G12010 235 / 6e-64 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 231 / 7e-63 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G40910 229 / 3e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G16870 229 / 4e-62 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029860 [exp] 659 / 0 AT5G36930 395 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 642 / 0 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10035674 [exp] 635 / 0 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10017143 [exp] 622 / 0 AT1G27180 387 / 6e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10038532 [exp] 618 / 0 AT5G36930 307 / 3e-90 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023272 [exp] 618 / 0 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10023487 [exp] 608 / 0 AT5G36930 284 / 4e-78 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042714 [exp] 576 / 0 AT5G36930 411 / 3e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038482 [exp] 570 / 0 AT1G69550 386 / 3e-113 disease resistance protein (TIR-NBS-LRR class) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017082 [exp] 333 / 1e-98 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 331 / 2e-97 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 326 / 9e-96 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G046000 [exp] 310 / 4e-94 AT5G36930 496 / 1e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 320 / 2e-93 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 319 / 2e-93 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 317 / 2e-92 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 313 / 2e-92 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143300 [exp] 318 / 4e-92 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 315 / 1e-91 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10034697 pacid=23162818 polypeptide=Lus10034697 locus=Lus10034697.g ID=Lus10034697.BGIv1.0 annot-version=v1.0 ATGTTGTCATTCTTTTGGGCGCTGGTCACACTTGTTCTGGCTGTATCATTCGTTTTGGAGAAACTCTCCAGAATCGCCAATGCTGATACTTGTTCAGAAC CAGAAGAACCATCAGCAGAACAACAATCGTCAGCTCCTTCCTCACCCAATTCATCCTTGCCTATGGAGTATGAGGTCTTCCTAAGTTTTCGAGGCCCTGA CGTCCGTAACAATTTCGCTGATTTTCTCCACAAGTATTTGGCTCGTTCCAAGATTCGGACCTTTCTTGATGATGAGGACCTTCGTAAAGGGGAGGAAATT GATCCTTCCCTCGTCAAGGTTATTCAAGAGTCGAAGGTGTACATTCCAGTACTTTCTCCAAACTATGCTTCAAGTAAGTGGTGCCTTAATGAGCTAGCGC TAATGGTGAAGTGTTGCATGCAAAATAATTGCCATATCCTGCTCCCCATTTTCTATATGGTGGAGCCTAGAGATGTACGACATCAACAGAGTTCTTACAA GAAAGCATTTCAAAAGCACAGTAGAAAATATGACGCAGGCACCATTCTGGAATGGAAGAAAGCTCTTGAGTATATGGGGAACCTGAAGGGATGGCATGTC ACTGAGTCTGATGGGCAAGGAACTGTCATAGACGAGGTTTTCTCCAAGGTGTGGTCGTATTTGTCAAGGGATTACATGTTAGCTACACATGATTTGGTTG GAATTGATTGTCATGTTGAAAACTTGAAGAAACTACTACGGTCAGACTTTGAATGCGTGAAGGTTATTGGCATCCATGGTATGGGCGGCCTTGGTAAGAC CACTATAGCCAAGGTATTATGCAATGAGGCTCTCATCATTCTTGATGATGTAGATATTAAGCTGAAGTTTAACGAAATTTTGGGTCAGTTAAAGGACTTT CACCTGGGAAGTAGATTTGTCATTACGACTAGAGACAGAAAAGTTGTGGAGCAGTTTCCACATTATGAGCTCTATGAACCTAAAGTATTGGGTGATGGGC ATTCTCTTCAACTATTCCGTAAACATGCTATCAGACAGGATTATCCTCCGGAAGAGGATGTTGCTTTATCCATGAAGTTTGTAGAAATTGCAGCGGGTCT CCCTTTGGCTCTTCAGGTCATAGGATCGCTCTTGTATCGCGAAACGAAAAGCTTTTGGAACGCAAAGTGGATACAATTAAAAGATATACCTCCTTCAGAA GTGCTAGAAACATTAAGAATAAGTTATTTGGCGTTGACTTATGAGGAAAAACAAGTATTTTGTGATATTGCTTGCCATTTTGCTGGAGAAGAAAATGAAG GACATTTCTACATGTGGAGTGACTGTGGGTTTCATCCAGAAATTGCAATAACTATTCTTGTGCAAAGGTCCTTTGTAAAAATCAACCAAAACTATCACAG GAGTTTGTTTGGGACGGCTGATCAGGGAAGTAATGTATTCTGGATGCATGATCATCTAAGACAGCTCGGCAGAACTATTGTTCGTGAAGAAAACTTTCGA TGTCCATGGAAACGCAGCAGGATATGGTCCAACAAGGATGCCTTGCAAATGTTTACCCTTAAAGAGGGAAGTCCACAATTGGAAGTTCTTGAAGTTGACG ACCTTAACGAGGAAAATTTTGAGCTGAATGATAGACATTTCGAGAAACTGTCAGGTTTAAGGTATCTTAAAGTTACAGGTAGAGGGTTAGTGGGAAATTT CAGCAAAATTCTCCCAAATTTGCGCTGGCTTCACCTGCTTCACTGCAGGTCGATCCCCATTGATCTGGATATGAAGAATTTAGTGATTTTCCATTTGGAA TTTTCCCCGTTTGCAAATGATTATGATTGTAGAGGATTGCAAAGAATAAAGGATGCACGCAAGCTGAAGTCTATAAGTTTACGTTACTGCGATATGTTAA CAACAGTTCCTGACCTGTCTCAATGCGAAAATATCGAGGAGATATTTATTCAGGGCTGTGATAGTCCTAGTATGAGTGGGGAACTGCACATTGGCCAATT GAACAACCTGAGAGAACTGCATCTCAGCCAGATCAACATAACACAGTTATCTGGGCTTGGACAAGTTAGAAATCTAGAAATATTGGAAATTGTCAATATT CCTTGTCTAATTAATCTTGATGGTCTTGAACATCTAATCCTTCTGAAGCATTTTATGCTGGCAAGATGTGATGCACTTAGAAAACTACCCAGTTTTGTGA ATTTGACCAAGTTGCAGGAATTGGAGATCACTCGTTGTCAGTATCTCCCTGAATTGTATGGCCATGGTGAAAAGGCGGAGCCTCTGTCAACTCTGTTATT CGATGGGTGCAACAAGCCAGAATATTCAGATTCAATGGAACGACTGCTACCTTTTTTGTCTAACTTAGGTAACTTGCAGCGGTTAGAGTTCACAGACACT GGCACAAACTCTCTCTTGTCACTGGAACGTGTCCTGGATTTATCTGGCCTCTCGAATCTGCGTAATTTATTTATGTCTGGGTGTGAAAGGGTTACTCAAG TTATAGGGCTTGAGAGATTGGAACTGTTGCGCACACTGAATATTGAAGACTTCACGTCACTTAGAAAGTTGTCGGGTCTATCTGGTCTCAAGAATCTAAA GACATTTGGTCTATTTGGATGTCCAAAGTTGACTGAGGTGATAGGGATCGAGGAAATGGAGTCATTGGTGAGTGTGTCGGTGACTGATTGCCCATGGAGT ACAAATTTGCCGGATATGTCTGGTTTGCAGCATTTTAAGGGGTTCATTACTCCGGGATGA
AA sequence Show only first row Show all	>Lus10034697 pacid=23162818 polypeptide=Lus10034697 locus=Lus10034697.g ID=Lus10034697.BGIv1.0 annot-version=v1.0 MLSFFWALVTLVLAVSFVLEKLSRIANADTCSEPEEPSAEQQSSAPSSPNSSLPMEYEVFLSFRGPDVRNNFADFLHKYLARSKIRTFLDDEDLRKGEEI DPSLVKVIQESKVYIPVLSPNYASSKWCLNELALMVKCCMQNNCHILLPIFYMVEPRDVRHQQSSYKKAFQKHSRKYDAGTILEWKKALEYMGNLKGWHV TESDGQGTVIDEVFSKVWSYLSRDYMLATHDLVGIDCHVENLKKLLRSDFECVKVIGIHGMGGLGKTTIAKVLCNEALIILDDVDIKLKFNEILGQLKDF HLGSRFVITTRDRKVVEQFPHYELYEPKVLGDGHSLQLFRKHAIRQDYPPEEDVALSMKFVEIAAGLPLALQVIGSLLYRETKSFWNAKWIQLKDIPPSE VLETLRISYLALTYEEKQVFCDIACHFAGEENEGHFYMWSDCGFHPEIAITILVQRSFVKINQNYHRSLFGTADQGSNVFWMHDHLRQLGRTIVREENFR CPWKRSRIWSNKDALQMFTLKEGSPQLEVLEVDDLNEENFELNDRHFEKLSGLRYLKVTGRGLVGNFSKILPNLRWLHLLHCRSIPIDLDMKNLVIFHLE FSPFANDYDCRGLQRIKDARKLKSISLRYCDMLTTVPDLSQCENIEEIFIQGCDSPSMSGELHIGQLNNLRELHLSQINITQLSGLGQVRNLEILEIVNI PCLINLDGLEHLILLKHFMLARCDALRKLPSFVNLTKLQELEITRCQYLPELYGHGEKAEPLSTLLFDGCNKPEYSDSMERLLPFLSNLGNLQRLEFTDT GTNSLLSLERVLDLSGLSNLRNLFMSGCERVTQVIGLERLELLRTLNIEDFTSLRKLSGLSGLKNLKTFGLFGCPKLTEVIGIEEMESLVSVSVTDCPWS TNLPDMSGLQHFKGFITPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36930			Disease resistance protein (TI...		Lus10034697 [exp]	0	1
AT5G38730			Tetratricopeptide repeat (TPR)...		Lus10032174 [exp]	3.6	0.8344
AT1G67590			Remorin family protein (.1.2)		Lus10041239 [exp]	5.5	0.7787
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10024826 [exp]	20.0	0.8249
AT3G19510	HD	HAT3.1	Homeodomain-like protein with ...		Lus10018741 [exp]	23.0	0.7982
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	23.1	0.7834
AT2G47210	MYB		myb-like transcription factor ...		Lus10015735 [exp]	27.5	0.8195
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	30.7	0.7861
AT1G52630			O-fucosyltransferase family pr...		Lus10026792 [exp]	30.8	0.7584
AT1G42440			unknown protein		Lus10030752 [exp]	31.6	0.8053
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	37.0	0.7763

Compare expression of checked genes

Lus10034697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.