Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66900 194 / 1e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66910 163 / 6e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G66630 153 / 8e-40 DAR5 DA1-related protein 5 (.1) AT4G33300 106 / 5e-24 ADR1-L1 ADR1-like 1 (.1.2) AT1G33560 92 / 3e-19 ADR1 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G04720 89 / 2e-18 PHX21, ADR1-L2 PHOENIX 21, ADR1-like 2 (.1) AT5G47280 85 / 3e-17 ADR1-L3 ADR1-like 3 (.1) AT1G63750 63 / 3e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G48620 63 / 4e-10 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G63880 63 / 4e-10 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033299 [exp] 368 / 5e-127 AT5G66900 113 / 3e-29 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10022464 [exp] 350 / 1e-111 AT5G66900 531 / 2e-177 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033298 [exp] 261 / 5e-86 ND / Lus10020779 [exp] 247 / 3e-73 AT5G66900 434 / 5e-141 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10007359 [exp] 227 / 2e-65 AT5G66900 473 / 3e-154 Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10033300 [exp] 194 / 3e-60 AT5G66630 46 / 8e-07 DA1-related protein 5 (.1) Lus10021769 [exp] 111 / 3e-25 AT4G33300 583 / 0.0 ADR1-like 1 (.1.2) Lus10032759 [exp] 102 / 1e-22 AT1G33560 543 / 0.0 ACTIVATED DISEASE RESISTANCE 1, Disease resistance protein (CC-NBS-LRR class) family (.1) Lus10018937 [exp] 76 / 5e-14 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G039000 [exp] 360 / 3e-117 AT5G66900 343 / 2e-107 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039100 [exp] 351 / 1e-112 AT5G66900 474 / 3e-156 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G039300 [exp] 261 / 3e-78 AT5G66900 540 / 0.0 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.007G038700 [exp] 221 / 2e-63 AT5G66900 481 / 3e-158 Disease resistance protein (CC-NBS-LRR class) family (.1) Potri.014G035700 [exp] 136 / 7e-34 AT4G33300 889 / 0.0 ADR1-like 1 (.1.2) Potri.002G129300 [exp] 127 / 6e-31 AT4G33300 902 / 0.0 ADR1-like 1 (.1.2) Potri.001G029300 [exp] 73 / 3e-13 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G201900 [exp] 72 / 4e-13 AT3G14470 567 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.014G003600 [exp] 66 / 4e-11 AT3G14470 388 / 2e-115 NB-ARC domain-containing disease resistance protein (.1) Potri.007G038800 [exp] 60 / 4e-11 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05659 [flax] [poplar] RPW8 Arabidopsis broad-spectrum mildew resistance protein RPW8 CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10034761 pacid=23142255 polypeptide=Lus10034761 locus=Lus10034761.g ID=Lus10034761.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCTTTCATCGCATCAGCTGCTACTGGAGCTGGTCTGGAGCTGGTTTTCGGAACTTTCCTCAAAGTAGTTTTCGAGGTAAAGAAGACCAACT CTCAATTCGCCCCAACACTCAAACTCCTCGAAGCTACCGTCAACGATTTGACTCCAGATATCAGGAGAATCGATGCTTTCAACAGAGAGTTCGATCGTCC GGACGAGATGACCGATCTAAAGGAGTTGATGACCGAAGGGGAACTCTTGGTTCGTAAGTGCTTGAAGATCCATCGCTACAACATATTCAAGAGGTATATA TATGCCAAGAAGCTTCTCAGGTTGAACCGTTCCATCCCTCAGTACATCGGCAGCGTTATGCAGATCATTCAATTTGCAGACCAGAAAGAAACCCTGTTTG AAGTCAAACAGCTGAACAACCAAATTAGGAAGTCCCTCCCTCGATCACTTTTAGGTCTCTGCTCCCCTCCAGATTTGAAAGTTGATCCAGTAGGGTTAGA AACTCCGTTGACGGAGTTGAAAGAACAGCTGCTCGGACATGAGCTCCCACTTGTTGTCATTTCTGCTCCCGATGGATGGGGGAAAACCACTCTTGCTACA GCAATCTGCCAGGATTCACAAGTTAGAGATAGATTTAAGGGGAATATATTGTTTGTCACTGCTGGGAGAAGTCCTAACATGATGGCTATAGTGGGGAGAC TTCTTGAGCACTACAATTGTCCACTACCTGAACTGCAGAGTGAAGATGAAGCTATCTTTGAACTAGAGAACCTTATGAGGAAGATTGAATCTCAGCCGGT TCTTTTGGTAATTGATGATCTTTCGGCTGGATCGGAATCTCTTCTTTCAAAACTCAAGTTCCAAATACCAAATTACCAGATTTTGGTGACCTCTAATTCT GAGTTCCCCGGAATTAGTTCCACATACAAAATGAAGCCCCTGAGTGATGAAGACGCCATGGCTCTTTTCTCTAGTGCTGCACTCACGAATGATGGGAACT CATTTGTTCCGGAGCAAGCTGTCGTGAGTCAGATTGTGAAAGCATGTAAAGGGTATCCAAAAGCCATTGCAAGGGTTGGGAGCTCACTAAGAGGGAGGCC TGCAGCAGAATGGCGTATGAGAGCTAAGGAGTCTTTCAGATCTTCAGGTGTTTCCAGTTTTGAGGGGCAAGATTCTCTTGAGAGCAAGTTGGATGAAGAA AATGAAGTCAACGAATACTCCAATGACCAAGGCTCATTTCCACACCTAGCCTCAAATACTGAAGATGCTAGCGTTTCAGGCGTGAAGAGAGAATTGCACA AGTCAGATGACGATGATAACTCTTGTCAGGTTTCAGTTGGTCTTCCAAACGCTGGCAGTGACAGTAGTAAAGATGACATCTTCGGTGATAAGCAGTTTAT CGTGCAACAAGATATTGTAGAGGCTTTAGCCATTCTTCGAAACAACACAGGAAGCAATGATCAAGGAAACGACTTGGTGATGAAAGTCGGAGGAACAAAT TACCCAAGTTCTGAAATTATGCCAATTGCGATGCAAAGTTAA
AA sequence Show only first row Show all	>Lus10034761 pacid=23142255 polypeptide=Lus10034761 locus=Lus10034761.g ID=Lus10034761.BGIv1.0 annot-version=v1.0 MAASFIASAATGAGLELVFGTFLKVVFEVKKTNSQFAPTLKLLEATVNDLTPDIRRIDAFNREFDRPDEMTDLKELMTEGELLVRKCLKIHRYNIFKRYI YAKKLLRLNRSIPQYIGSVMQIIQFADQKETLFEVKQLNNQIRKSLPRSLLGLCSPPDLKVDPVGLETPLTELKEQLLGHELPLVVISAPDGWGKTTLAT AICQDSQVRDRFKGNILFVTAGRSPNMMAIVGRLLEHYNCPLPELQSEDEAIFELENLMRKIESQPVLLVIDDLSAGSESLLSKLKFQIPNYQILVTSNS EFPGISSTYKMKPLSDEDAMALFSSAALTNDGNSFVPEQAVVSQIVKACKGYPKAIARVGSSLRGRPAAEWRMRAKESFRSSGVSSFEGQDSLESKLDEE NEVNEYSNDQGSFPHLASNTEDASVSGVKRELHKSDDDDNSCQVSVGLPNAGSDSSKDDIFGDKQFIVQQDIVEALAILRNNTGSNDQGNDLVMKVGGTN YPSSEIMPIAMQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66900			Disease resistance protein (CC...		Lus10034761 [exp]	0	1
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	1.0	0.8853
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012030 [exp]	2.8	0.8748
AT5G47860			Protein of unknown function (D...		Lus10042222 [exp]	3.5	0.8709
AT5G66900			Disease resistance protein (CC...		Lus10033299 [exp]	3.9	0.8709
AT3G03890			FMN binding (.1.2)		Lus10013617 [exp]	5.5	0.8661
AT4G31410			Protein of unknown function (D...		Lus10026950 [exp]	5.8	0.8849
AT5G01800			saposin B domain-containing pr...		Lus10022750 [exp]	6.2	0.8774
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10005420 [exp]	6.2	0.8454
AT1G27170			transmembrane receptors;ATP bi...		Lus10020533 [exp]	6.5	0.8519
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	7.9	0.8704

Compare expression of checked genes

Lus10034761 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.