Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59710 317 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G51030 242 / 6e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 239 / 2e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G61220 192 / 1e-59 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 186 / 4e-57 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 186 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G24050 76 / 2e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 72 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50600 68 / 1e-12 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 68 / 1e-12 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035736 [exp] 389 / 1e-136 AT3G59710 355 / 2e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037320 [exp] 322 / 8e-111 AT3G59710 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032524 [exp] 238 / 3e-77 AT5G51030 493 / 2e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10043023 [exp] 236 / 3e-76 AT5G51030 495 / 3e-178 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032525 [exp] 221 / 2e-70 AT5G61830 450 / 1e-160 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014689 [exp] 194 / 7e-58 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 187 / 1e-57 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 186 / 8e-57 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 184 / 3e-56 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G127700 [exp] 346 / 7e-120 AT3G59710 326 / 4e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G110200 [exp] 243 / 4e-79 AT5G51030 460 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G108400 [exp] 241 / 3e-78 AT5G51030 468 / 2e-167 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G080000 [exp] 193 / 8e-60 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 190 / 8e-59 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 189 / 4e-58 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 186 / 5e-57 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 184 / 2e-56 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G157000 [exp] 180 / 7e-55 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 180 / 9e-55 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034835 pacid=23142214 polypeptide=Lus10034835 locus=Lus10034835.g ID=Lus10034835.BGIv1.0 annot-version=v1.0 ATGGAGGACAAAGAGCTAGACCCTGTATTTTGTTCCCCATTTCCCTCCTCCACCAGATGGTGGTCGGAGGAGACGGTCGCAGTAGTCACCGGCGGGAACA AGGGAATCGGGTTCGCGGTGGTGAAGAAGCTGGCGGAGATGGGGCTCACCGTCATCTTAACGGCTAGAGACGTCGGCAGAGGGAAGCAGGCCGTTGAGAC GCTCAGGTCTGAGTTTGGTCTTCACGCCGTCAAGTTTCAGCAGCTCGACGTTGCGGATCCTTGTTCCATCCAGGCCTTCGTTTCCCACTTCCAAAACGAT TTCGGTGTACTGGACATCCTCGTGAACAATGCAGGGGTGTCGTTTAACGAGATAAATGAGAACTCGGTGGAGCATGCGGAGACAGTCATCCAAACTAATT TCTACGGTCCAAAACGGTTGACTGACGCTCTCCTACCTTTCTTCCGCCGATCCCACTCCGTTGGCCGCATCCTCAACATTAGCTCCAGATTAGGCTCCAT CAATAGATTGAGGAATCGGAGAGTGAAGGCAATGTTGTTAGAAGTGGAAAGGCTGACGGAGGAGCAAATCGAGGAGGAAGTAGTGGGTAAGTTTCTGAGG ACGGTGAAGGAAGGGACATGGCAGGGACAAGGTTGGCCGGCGCACTGGACGGATTACTCTGTTTCAAAATTGGCGCTGAACGCCTACTCTAGGATTTTGG CGGAACGATACCGTGGCGACGGCTGGCTGAGCGTCAACTGTTTCTGCCCGGGATTCACGCAGACCTCCATGACCCGCGGCCGAGGGACTCATTCTGCCGA TTATGCTGCCAAGTCCGCGGTGGCGCTTGCTTTGCTCCCTCCCGACTTGCTCACCACCGGCAACTTCTACCTCAAAAGTGCTACCAGCTCTACCAATATT TCCAAGATTTAA
AA sequence Show only first row Show all	>Lus10034835 pacid=23142214 polypeptide=Lus10034835 locus=Lus10034835.g ID=Lus10034835.BGIv1.0 annot-version=v1.0 MEDKELDPVFCSPFPSSTRWWSEETVAVVTGGNKGIGFAVVKKLAEMGLTVILTARDVGRGKQAVETLRSEFGLHAVKFQQLDVADPCSIQAFVSHFQND FGVLDILVNNAGVSFNEINENSVEHAETVIQTNFYGPKRLTDALLPFFRRSHSVGRILNISSRLGSINRLRNRRVKAMLLEVERLTEEQIEEEVVGKFLR TVKEGTWQGQGWPAHWTDYSVSKLALNAYSRILAERYRGDGWLSVNCFCPGFTQTSMTRGRGTHSADYAAKSAVALALLPPDLLTTGNFYLKSATSSTNI SKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10034835 [exp]	0	1
AT3G48660			Protein of unknown function (D...		Lus10003120 [exp]	2.0	0.9818
AT5G11420			Protein of unknown function, D...		Lus10019724 [exp]	2.8	0.9817
AT5G14060		CARAB-AK-LYS	Aspartate kinase family protei...		Lus10012568 [exp]	4.9	0.9582
AT5G25940			early nodulin-related (.1)		Lus10030052 [exp]	4.9	0.9788
AT2G18670			RING/U-box superfamily protein...		Lus10019979 [exp]	5.5	0.9761
AT3G08030			Protein of unknown function, D...		Lus10019723 [exp]	5.5	0.9757
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10038904 [exp]	6.9	0.9776
AT5G24600			Protein of unknown function, D...		Lus10013947 [exp]	7.3	0.9690
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Lus10017499 [exp]	8.1	0.9516
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10031333 [exp]	9.5	0.9680

Compare expression of checked genes

Lus10034835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.