Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04900 465 / 8e-167 NOL NYC1-like (.1) AT4G13250 197 / 6e-60 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G10050 72 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 72 / 2e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 71 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 71 / 5e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03980 66 / 2e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G05530 63 / 1e-11 SDRA, IBR1 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) AT4G13180 61 / 1e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50590 61 / 1e-10 ATHSD4 hydroxysteroid dehydrogenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033408 [exp] 499 / 4e-180 AT5G04900 478 / 1e-170 NYC1-like (.1) Lus10023644 [exp] 207 / 2e-63 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034917 [exp] 201 / 4e-63 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10020019 [exp] 74 / 3e-15 AT4G05530 395 / 5e-141 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001430 [exp] 73 / 6e-15 AT4G05530 369 / 2e-130 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Lus10001560 [exp] 73 / 2e-14 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10015821 [exp] 72 / 3e-14 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 70 / 8e-14 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026260 [exp] 70 / 8e-14 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014200 [exp] 490 / 2e-176 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.018G081200 [exp] 206 / 7e-63 AT4G13250 696 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G206800 [exp] 81 / 1e-17 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 71 / 3e-14 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 71 / 4e-14 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1) Potri.010G056100 [exp] 69 / 2e-13 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 69 / 3e-13 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 67 / 1e-12 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G059000 [exp] 66 / 2e-12 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G228533 [exp] 65 / 4e-12 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034874 pacid=23142288 polypeptide=Lus10034874 locus=Lus10034874.g ID=Lus10034874.BGIv1.0 annot-version=v1.0 ATGGTTCCTCCTTACAATGTGCTCATAACCGGTTCCACCAAAGGTATAGGTTATGCACTGGCTAAAGGGTTTCTAGAGGCTGGTGACAATGTCGTTATAT GCTCAAGATCAGCTGAAAGGGTCGAGTCAGCTGTCCAGAGCCTGAGAAAAGAATGTGGAGAGCAGCATGTGTGGGGTACAACTTGTGATGTTAGAAAAGG AGAAGATGTCAAGAATTTAGTCGCATTTGCTCAGGGAAAACTAAAATATATTGATCTATGGATTAATAATGCTGGATCAAATGCATATAGCTTTAAGCCC TTAGCAGAATCCTCAGATGAAGACCTTATAGAAGTTGTTACCACAAACACCCTCGGATTGATGATATGTTGCCGAGAGGCAATAATTATGATGCTTAACC AACCTCGAGGGGGTCATATATTCAACATTGATGGTGCTGGTTCTGATGGAAGACCTACCCCCAGGTTTGCAGCATATGGGGCAACTAAGCGTGGTGTGGT GCACTTGACAAAGTCCTTGCAGGCAGAGCTGCAGATGCAGGATGTTCAAAATGTTGTAGTACACAATCTTTCGCCTGGAATGGTAACAACCAACCTCCTA ATGTCTGGAGCCACAACAAAGCAGGCAAAGTTCTTCATTAATGTTCTGGCAGAACCTGCAGAAGTGGTTGCAGCGTATCTGGTTCCAAATATCAGATCAA TTCCAGAGAATGGATCAAAGAGACCTACATACATAAGGTTCCTTACTGGATTAAAAGCGTATTCTCAGATATTTTCAGTTAAGTGGATTACAAAAAGTTC ATTTTCCGTCTGCAAGTAG
AA sequence Show only first row Show all	>Lus10034874 pacid=23142288 polypeptide=Lus10034874 locus=Lus10034874.g ID=Lus10034874.BGIv1.0 annot-version=v1.0 MVPPYNVLITGSTKGIGYALAKGFLEAGDNVVICSRSAERVESAVQSLRKECGEQHVWGTTCDVRKGEDVKNLVAFAQGKLKYIDLWINNAGSNAYSFKP LAESSDEDLIEVVTTNTLGLMICCREAIIMMLNQPRGGHIFNIDGAGSDGRPTPRFAAYGATKRGVVHLTKSLQAELQMQDVQNVVVHNLSPGMVTTNLL MSGATTKQAKFFINVLAEPAEVVAAYLVPNIRSIPENGSKRPTYIRFLTGLKAYSQIFSVKWITKSSFSVCK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04900		NOL	NYC1-like (.1)		Lus10034874 [exp]	0	1
AT1G03160		FZL	FZO-like (.1.2)		Lus10000656 [exp]	1.4	0.9060
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015103 [exp]	7.2	0.8354
AT5G10960			Polynucleotidyl transferase, r...		Lus10042746 [exp]	7.9	0.8407
AT5G13760			Plasma-membrane choline transp...		Lus10005331 [exp]	8.5	0.8071
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	8.7	0.8860
AT5G59250			Major facilitator superfamily ...		Lus10040772 [exp]	10.5	0.8171
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001839 [exp]	11.9	0.8747
AT5G57170			Tautomerase/MIF superfamily pr...		Lus10034783 [exp]	13.6	0.8398
AT3G47490			HNH endonuclease (.1.2.3)		Lus10034462 [exp]	14.2	0.8306
AT1G53025			Ubiquitin-conjugating enzyme f...		Lus10028151 [exp]	16.0	0.8186

Compare expression of checked genes

Lus10034874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.