Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19210 171 / 3e-54 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G74930 136 / 3e-40 AP2_ERF ORA47, ERF018 Integrase-type DNA-binding superfamily protein (.1) AT5G21960 130 / 1e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G31060 103 / 8e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G50260 91 / 3e-23 AP2_ERF DEAR1, CEJ1, ATERF#011 DREB AND EAR MOTIF PROTEIN 1, cooperatively regulated by ethylene and jasmonate 1 (.1) AT1G21910 93 / 4e-23 AP2_ERF DREB26 dehydration response element-binding protein 26, Integrase-type DNA-binding superfamily protein (.1) AT4G36900 90 / 3e-22 AP2_ERF DEAR4, RAP2.10 DREB AND EAR MOTIF PROTEIN 4, related to AP2 10 (.1) AT5G67190 89 / 3e-22 AP2_ERF DEAR2 DREB and EAR motif protein 2 (.1) AT2G23340 89 / 5e-22 AP2_ERF DEAR3 DREB and EAR motif protein 3 (.1) AT4G06746 86 / 3e-21 AP2_ERF DEAR5, RAP2.9 DREB AND EAR MOTIF PROTEIN 5, related to AP2 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033420 [exp] 379 / 1e-135 AT1G19210 181 / 4e-58 Integrase-type DNA-binding superfamily protein (.1) Lus10038082 [exp] 132 / 2e-38 AT5G21960 155 / 3e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10009798 [exp] 123 / 2e-35 AT1G19210 132 / 1e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10010043 [exp] 92 / 2e-23 AT2G23340 170 / 1e-54 DREB and EAR motif protein 3 (.1) Lus10009373 [exp] 90 / 1e-22 AT5G67190 164 / 3e-52 DREB and EAR motif protein 2 (.1) Lus10018727 [exp] 88 / 7e-22 AT5G67190 162 / 1e-51 DREB and EAR motif protein 2 (.1) Lus10009468 [exp] 82 / 5e-20 AT1G22810 132 / 1e-40 Integrase-type DNA-binding superfamily protein (.1) Lus10041044 [exp] 81 / 5e-19 AT1G71520 138 / 9e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 79 / 8e-19 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G138800 [exp] 182 / 6e-58 AT1G19210 189 / 3e-61 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138700 [exp] 161 / 4e-50 AT1G19210 174 / 1e-55 Integrase-type DNA-binding superfamily protein (.1) Potri.006G218200 [exp] 158 / 8e-49 AT1G19210 176 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Potri.018G047300 [exp] 154 / 3e-47 AT1G19210 169 / 1e-53 Integrase-type DNA-binding superfamily protein (.1) Potri.018G038100 [exp] 105 / 8e-29 AT5G21960 100 / 5e-27 Integrase-type DNA-binding superfamily protein (.1) Potri.006G138900 [exp] 102 / 1e-27 AT5G21960 86 / 3e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.006G080300 [exp] 94 / 5e-24 AT4G31060 143 / 1e-43 Integrase-type DNA-binding superfamily protein (.1) Potri.013G100300 [exp] 92 / 2e-23 AT1G22810 140 / 5e-43 Integrase-type DNA-binding superfamily protein (.1) Potri.007G046500 [exp] 89 / 8e-22 AT5G67190 149 / 7e-46 DREB and EAR motif protein 2 (.1) Potri.019G073300 [exp] 88 / 9e-22 AT1G22810 144 / 1e-44 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10034885 pacid=23142276 polypeptide=Lus10034885 locus=Lus10034885.g ID=Lus10034885.BGIv1.0 annot-version=v1.0 ATGGTGAAGCAATCACCAACTAGAGTGGAGAGACGTACAGCAGCAGCAGCAGCAGCCGCTGCCGACGAATTGAAGTTCAAGGGAGTAAGGAAGAGGAAGT GGGGGAAGTGGGTGTCGGAAATCAGGCTACAAACCAGCCGAGACCGCATTTGGTTGGGTTCCTACGACTCCCCAGAGAAAGCTGCTAGAGCATTCGACGC CGCCCTTTTCTGCTTACGTGGACCCACGTCCAACTTCAATTTCCCCGACAATCCCCCCGCACACATCCCAGGTGCTGGATCGCTTTCTCGAGACCAGATT CAGGAAGCCGCCGTTCGGTTCGCCAATTCAGAACCGAATCTTTCGGGTTGGTCTAACTCCGGGTCGGCTGATTCCCCCTGCCCATCTTCCGACGTCGAAT CAGTTCAGTCCCCTCCACCTGCTGAGCTGCCTCTCGACGACTGCTTCTTGGATCAGCTTGCCAATATCGGGTCGGGTCCTGCTACTTTCGCATTCGACTA CGGGATTTTCCCCGGTTTTGATGATTTGTGCAACGATTACTTCGCACAAACTACTGGAATGTTCAATTATGAGGAAGAGCAAACTACTCAGGACCAAGTT TTAGGTGGTCATGATTCATTTCTCTGGAATTTCTAA
AA sequence Show only first row Show all	>Lus10034885 pacid=23142276 polypeptide=Lus10034885 locus=Lus10034885.g ID=Lus10034885.BGIv1.0 annot-version=v1.0 MVKQSPTRVERRTAAAAAAAADELKFKGVRKRKWGKWVSEIRLQTSRDRIWLGSYDSPEKAARAFDAALFCLRGPTSNFNFPDNPPAHIPGAGSLSRDQI QEAAVRFANSEPNLSGWSNSGSADSPCPSSDVESVQSPPPAELPLDDCFLDQLANIGSGPATFAFDYGIFPGFDDLCNDYFAQTTGMFNYEEEQTTQDQV LGGHDSFLWNF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	0	1
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10033420 [exp]	1.0	0.9726
AT4G00300			fringe-related protein (.1.2)		Lus10018823 [exp]	2.0	0.9614
AT4G29780			unknown protein		Lus10027622 [exp]	2.4	0.9600
AT3G21570			unknown protein		Lus10012773 [exp]	4.7	0.9194
AT4G29780			unknown protein		Lus10011946 [exp]	5.7	0.9522
AT5G44210	AP2_ERF	AtERF9, ATERF-9	ERF DOMAIN PROTEIN- 9, erf dom...		Lus10015415 [exp]	5.8	0.9066
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	5.9	0.9480
AT5G42570			B-cell receptor-associated 31-...		Lus10030043 [exp]	6.0	0.9185
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10023099 [exp]	6.9	0.9455
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10032372 [exp]	7.5	0.9399

Compare expression of checked genes

Lus10034885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.