Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05410 119 / 4e-32 AP2_ERF DREB2A DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) AT3G11020 109 / 4e-28 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT2G40350 97 / 6e-25 AP2_ERF DREB2H Integrase-type DNA-binding superfamily protein (.1) AT2G40340 100 / 1e-24 AP2_ERF AtERF48, DREB2C Integrase-type DNA-binding superfamily protein (.1) AT1G75490 90 / 1e-21 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT5G18450 86 / 2e-19 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT3G57600 81 / 6e-18 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT2G38340 79 / 1e-17 AP2_ERF DREB2E, DREB19 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) AT2G40220 74 / 2e-15 AP2_ERF ATABI4, GIN6, SUN6, SIS5, SAN5, ISI3, ABI4 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) AT1G46768 71 / 2e-15 AP2_ERF RAP2.1 related to AP2 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023633 [exp] 293 / 8e-100 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 92 / 2e-22 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 91 / 3e-22 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 89 / 9e-21 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 89 / 1e-20 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 82 / 5e-18 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10002855 [exp] 81 / 1e-17 AT2G40340 132 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012226 [exp] 81 / 1e-17 AT2G40340 137 / 2e-37 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 77 / 1e-16 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183700 [exp] 133 / 1e-37 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.008G073600 [exp] 133 / 1e-37 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 89 / 5e-21 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 89 / 6e-21 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.006G104200 [exp] 90 / 1e-20 AT2G38340 91 / 1e-20 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 86 / 2e-19 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 85 / 3e-19 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.016G126100 [exp] 86 / 5e-19 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.014G025200 [exp] 71 / 6e-15 AT1G46768 160 / 3e-51 related to AP2 1 (.1) Potri.008G210900 [exp] 71 / 1e-14 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10034902 pacid=23181423 polypeptide=Lus10034902 locus=Lus10034902.g ID=Lus10034902.BGIv1.0 annot-version=v1.0 ATGGCTGCTTTCAATCAAGCCTCTAGTTCAGATTCTTCCAGAAAGAGGAGACGAAGAAGAACCGGGAGCGAATCCGTAGCAGAGACGCTTAAAAAGTGGA AGCAGTACAACGAGTATCTAGATTCGGAAAACAGCAGCAAATCCGGCCGCCGAGTTCCGGCCAAGGGTTCCAAGAAAGGATGTATGAAAGGGAAAGGAGG TCCGGAGAATTCAAAGTGCAAGTACAGGGGCGTTAGGCAGAGAACGTGGGGGAAGTGGGTAGCGGAGATTCGGGAGCCGAACAAAGGTCCGAGGCTATGG CTCGGTACTTTCCCCACCGCTTACGAAGCTGCTCTCGCCTACGACGACGCTGCCAGAGCTATGTACGGCCCTTGTGCCAGGCTCAACCTTCCCGCACAAA CTTCCAGTACTTGTGATTCGTCAACAACAACAAAAACAACGCGGTCAGAGGTTTCTGGGAATGACCAGATTGTCCCTGGAGAGGAAGGGGAAGGTGAATC GAAACTTGCTAAGCAAGAATCTGCCGAGGAGGGGGAGAATGACCGTCTTGTCCTTACGGGAACGAAACTTGCTCCCCAAGTTAGAGGAGAACCCTTAGAC GTTAAGGACTATGAGTGGCAAAATTTGACAGGGGATGAGGTGTTTAGCATTGAGGAGTTGCTTGGAGAACTGGACAAGCATCCACTTGACGCTGGCTTGC TGTTAGGGGATAATAACAATATTAATACACAGGCATATCTGCAGTGCTCTTAG
AA sequence Show only first row Show all	>Lus10034902 pacid=23181423 polypeptide=Lus10034902 locus=Lus10034902.g ID=Lus10034902.BGIv1.0 annot-version=v1.0 MAAFNQASSSDSSRKRRRRRTGSESVAETLKKWKQYNEYLDSENSSKSGRRVPAKGSKKGCMKGKGGPENSKCKYRGVRQRTWGKWVAEIREPNKGPRLW LGTFPTAYEAALAYDDAARAMYGPCARLNLPAQTSSTCDSSTTTKTTRSEVSGNDQIVPGEEGEGESKLAKQESAEEGENDRLVLTGTKLAPQVRGEPLD VKDYEWQNLTGDEVFSIEELLGELDKHPLDAGLLLGDNNNINTQAYLQCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	0	1
AT1G52560			HSP20-like chaperones superfam...		Lus10024225 [exp]	8.8	0.7207
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10014876 [exp]	13.2	0.7087
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10023633 [exp]	13.9	0.7072
AT2G28680			RmlC-like cupins superfamily p...		Lus10040867 [exp]	15.4	0.6884
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10000932 [exp]	19.1	0.6995
AT2G26150	HSF	ATHSFA2	heat shock transcription facto...		Lus10039134 [exp]	20.3	0.6974
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	22.8	0.7044
AT5G46090			Protein of unknown function (D...		Lus10033645 [exp]	23.0	0.6855
AT5G01660			unknown protein		Lus10040599 [exp]	25.2	0.6907
					Lus10029261 [exp]	27.0	0.6907

Compare expression of checked genes

Lus10034902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.