Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24530 747 / 0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G19150 71 / 1e-13 Ankyrin repeat family protein (.1.2) AT5G20350 67 / 2e-11 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 62 / 1e-10 Ankyrin repeat family protein (.1) AT2G14255 57 / 2e-08 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G28840 56 / 3e-08 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT1G14480 56 / 3e-08 Ankyrin repeat family protein (.1.2) AT5G66055 56 / 4e-08 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT4G27780 54 / 1e-07 ACBP2 acyl-CoA binding protein 2 (.1) AT5G02620 54 / 1e-07 ATANK1, ANK1 ankyrin-like1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023642 [exp] 955 / 0 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10043218 [exp] 871 / 0 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011096 [exp] 507 / 3e-180 AT3G24530 471 / 5e-167 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 316 / 2e-106 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10005293 [exp] 209 / 4e-66 AT3G24530 146 / 5e-43 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10001414 [exp] 76 / 3e-15 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 69 / 7e-13 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10016561 [exp] 66 / 3e-11 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10041853 [exp] 55 / 8e-08 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081000 [exp] 791 / 0 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.006G158600 [exp] 778 / 0 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.003G103400 [exp] 90 / 6e-20 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 85 / 2e-18 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 57 / 7e-09 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 58 / 8e-09 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G185200 [exp] 58 / 1e-08 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 57 / 2e-08 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 57 / 2e-08 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G335400 [exp] 57 / 2e-08 AT3G01750 701 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10034913 pacid=23181359 polypeptide=Lus10034913 locus=Lus10034913.g ID=Lus10034913.BGIv1.0 annot-version=v1.0 ATGCAGAGGCCTGACCAGGATCAGCGGTCGAGATCTTCCAAACCGGCCACGATTCATGCCTGCGCTCAGTCCGGCGACCTTTCCGCCGTCCAGAAGCTCC TCAAAGAAAACCCTTCTCTTCTCAATGAGAGAAACCCTGTTATGACACAGACTCCTCTCCATGTTTCTGCTGGCAATAACAAGGGGGAGATTGTTAAATT TCTGCTCAGTTGGAAAGGTGCTGCGAAGGTTGAATTAGAAGCCATGAACATGTATGGGGAAACACCATTGCACATGGCAGCAAAGAACGGGTGCAACGAG GCTGCCCAGTTGCTCCTTTCTCATGGCGCTTACATTGAGGCCAAAGCAAACAATGGTATGACTCCTTTACACTTGGCTGTTTGGTACTCTATAAGATCGG ATGATTGCTCAACTGTCAAGACACTGCTAGAGTACAATGCAGACTGTAGTGCAAGGGACAATGAGGGCATGACTCCTCTGAAACATCTTTCACAAGGTCC AGGAAGTGACAAGTTGCGCCACCTGTTAAACCGGTATCTTGAAGAGCAGAAGAGGAGAAAAGCAGTTGAAGCATGCAGTGAATCAAAGGCTAAAATGGAT GAACTTGACAAAGCACTGTTAAGCATAGTAGGGCTGCATGACCTCAAGGTTCAGCTAAGGAAATGGGCTAAAGGAATGCTTCTGGATGAGAGGCGCCGAG CCCTTGGTCTGAAACTGGGAGTTCGAAGGCCTCCTCACATGGCGTTTCTTGGAAATCCTGGAACAGGTAAGACCATGGTAGCTCGAATTCTGGGAAGATT GCTCCATCTGGTGGGTATCCTACCTACAGATAAAGTGACAGAAGTACAACGTACAGATTTGGTTGGCGAATTTGTTGGTCATACCGGACCAAAAACTAGG AAGAAGGTAACTTTCAACTATTGTTTGTGGGATGATGCGTTTGGAATCTTCTTCTCTGCATATCCCGATGACACAAGAATGTTCTTGACACTTGTGTTTG TGCAGATCAAAGAAGCCGAGGGAGGGATTCTATTTGTTGATGAGGCATACCGTCTTATACCAATGCAGAAAGCAGATGATAAGGACTATGGCTTAGAAGC CTTAGAAGAGATAATGTCAGTTATGGATACTGGGAAGATTGTGGTCATATTTGCCGGGTACAGCGAACCCATGAAACGCGTAATTGCATCTAATGAAGGT TTCTGCAGAAGGGTAACTAAGTTTTTCACATTTGATGATTTCACTTCTCGCGATTTAGCGAATATTGTCCATATAAAGATGAAAGACCAAGAGGAAGGGG AAGAAGGTATGCTGTATGGGTTTCAGTTACACCCTTCATGCAGCATCGATGCTATCTCGAGAGTAATCGAGGAAGAGACCACCAAGAAGCAACGTAGAGA GATGAATGGAGGTTTAGTAGATACAATGCTACTGAATGCTAGAGAGAATCTTGACCTCAGGCTTGATTTCGACTGTGTCGATGCTGATAAACTCCGGACA ATCACGTTGGAGGATCTGGAAGCAGGGTTGCGGTTATTGTCTCGGTTTTGA
AA sequence Show only first row Show all	>Lus10034913 pacid=23181359 polypeptide=Lus10034913 locus=Lus10034913.g ID=Lus10034913.BGIv1.0 annot-version=v1.0 MQRPDQDQRSRSSKPATIHACAQSGDLSAVQKLLKENPSLLNERNPVMTQTPLHVSAGNNKGEIVKFLLSWKGAAKVELEAMNMYGETPLHMAAKNGCNE AAQLLLSHGAYIEAKANNGMTPLHLAVWYSIRSDDCSTVKTLLEYNADCSARDNEGMTPLKHLSQGPGSDKLRHLLNRYLEEQKRRKAVEACSESKAKMD ELDKALLSIVGLHDLKVQLRKWAKGMLLDERRRALGLKLGVRRPPHMAFLGNPGTGKTMVARILGRLLHLVGILPTDKVTEVQRTDLVGEFVGHTGPKTR KKVTFNYCLWDDAFGIFFSAYPDDTRMFLTLVFVQIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDTGKIVVIFAGYSEPMKRVIASNEG FCRRVTKFFTFDDFTSRDLANIVHIKMKDQEEGEEGMLYGFQLHPSCSIDAISRVIEEETTKKQRREMNGGLVDTMLLNARENLDLRLDFDCVDADKLRT ITLEDLEAGLRLLSRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24530			AAA-type ATPase family protein...		Lus10034913 [exp]	0	1
AT1G04780			Ankyrin repeat family protein ...		Lus10011743 [exp]	2.6	0.8754
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10022281 [exp]	2.8	0.8749
AT3G24530			AAA-type ATPase family protein...		Lus10023642 [exp]	3.5	0.8292
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	3.9	0.8631
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10011645 [exp]	4.1	0.8069
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	9.0	0.8194
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10012340 [exp]	9.5	0.8352
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	9.8	0.8119
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Lus10026548 [exp]	10.5	0.8131
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	11.0	0.8133

Compare expression of checked genes

Lus10034913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.