Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13250 522 / 0 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 190 / 9e-58 NOL NYC1-like (.1) AT4G13180 70 / 2e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 69 / 3e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 68 / 5e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 68 / 8e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 67 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G63380 64 / 5e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G55310 65 / 7e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 65 / 7e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023644 [exp] 593 / 0 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10033408 [exp] 192 / 1e-58 AT5G04900 478 / 1e-170 NYC1-like (.1) Lus10034874 [exp] 186 / 4e-57 AT5G04900 466 / 7e-167 NYC1-like (.1) Lus10040733 [exp] 82 / 9e-18 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 78 / 2e-16 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 78 / 2e-16 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 78 / 3e-16 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 75 / 3e-15 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 74 / 8e-15 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081200 [exp] 531 / 0 AT4G13250 696 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G014200 [exp] 192 / 1e-58 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.013G026000 [exp] 74 / 4e-15 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.019G033500 [exp] 74 / 5e-15 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 74 / 8e-15 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 73 / 1e-14 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 72 / 4e-14 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 71 / 7e-14 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 71 / 9e-14 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G035200 [exp] 71 / 1e-13 AT3G55290 385 / 8e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10034917 pacid=23181371 polypeptide=Lus10034917 locus=Lus10034917.g ID=Lus10034917.BGIv1.0 annot-version=v1.0 ATGAATGATCTTATCTGGTATAGCTGGCTTGGAGGAATCATAATAGGCACAATGATAGGCGCCAACATGGTTTTGGATGAACATTGTCGAGCCGGCCCTC GTAATGTTGTCATAACTGGAAGCACACGAGGATTGGGAAAAGCACTTGCCAGGGAATTTCTTCTTTCCGGGGATCATGTGGTAGTTGCATCACGCAGCCA GGAGTTTGTGGATATGACGGTGAAGGAGCTCGAGGAGAACATCAAAGAAGGAATGGCATCCGCAGAAGGCTCGTCCAAGCAACATCTGGGTCATGCAAGA GTAGTTGGTATAGCTTGTGATGTTTGTGATCCGTCTGATGTGAAGAAACTCGCTGATTTTGCGGTCAAGGAATTCGGTTCGATTAACTTATGGATAAACA ATGCTGGGACAAATAAAGGTTTCAGACCTTTGCTGCAGTTCAGTGATGAAGACATAACTCAGATTGTGTCGACGAATTTGGTTGGATCCATTCTCTGCAC CCGAGAAGCTATGCGAGTGATGGAAAACCAGCCTAAGGGGGGTCACATTTTCAATATGGATGGTGCAGGTTCTGGTGGCTCAAGTACTCCTCTTACAGCA GTCTACGGAGCAACGAAGTGTGGTCTTAGACAGCTTCAAACTTCACTTCTGAAGGAGAGTAAGAAGTCGAAGGTTGGAGTACATACAGCATCACCAGGCA TGGTCCTTACAGAATTGCTTTTGAGCATCACTCTTATCACAACCAGTGGATCGACGCTTAAAAACAAGCAAATGTTCAACATAATATGCGAGCTCCCGGA GACTGTCGCGAGGACCTTAGTTCCGCGAATGAGGGTTGTGAAAGGCTCGGGGAAGGCGATCAATTACTTAACTCCTCCGAGAATCTTACTTGCTTTAGTC ACGGCTTGGTTGAGTCGTGGTCGGTGGTTCGATGACCAGGGAAGAGCATTGTATGCTGCGGAGGCAGACCGGTGA
AA sequence Show only first row Show all	>Lus10034917 pacid=23181371 polypeptide=Lus10034917 locus=Lus10034917.g ID=Lus10034917.BGIv1.0 annot-version=v1.0 MNDLIWYSWLGGIIIGTMIGANMVLDEHCRAGPRNVVITGSTRGLGKALAREFLLSGDHVVVASRSQEFVDMTVKELEENIKEGMASAEGSSKQHLGHAR VVGIACDVCDPSDVKKLADFAVKEFGSINLWINNAGTNKGFRPLLQFSDEDITQIVSTNLVGSILCTREAMRVMENQPKGGHIFNMDGAGSGGSSTPLTA VYGATKCGLRQLQTSLLKESKKSKVGVHTASPGMVLTELLLSITLITTSGSTLKNKQMFNIICELPETVARTLVPRMRVVKGSGKAINYLTPPRILLALV TAWLSRGRWFDDQGRALYAAEADR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10034917 [exp]	0	1
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	2.4	0.9875
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	3.5	0.9875
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10039329 [exp]	4.2	0.9875
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10036457 [exp]	4.9	0.9875
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10019853 [exp]	5.5	0.9875
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	6.0	0.9748
AT3G43860		ATGH9A4	glycosyl hydrolase 9A4 (.1)		Lus10009794 [exp]	7.0	0.9699
AT4G15610			Uncharacterised protein family...		Lus10033972 [exp]	7.9	0.9465
AT3G07070			Protein kinase superfamily pro...		Lus10011866 [exp]	8.5	0.9554
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10031958 [exp]	11.0	0.9310

Compare expression of checked genes

Lus10034917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.