Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 160 / 5e-48 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 158 / 4e-47 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 152 / 8e-45 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 153 / 2e-44 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 140 / 7e-41 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 140 / 3e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 138 / 7e-40 AP2_ERF ATERF38 ERF family protein 38 (.1) AT2G25820 136 / 1e-38 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT3G60490 132 / 1e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 128 / 2e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043240 [exp] 182 / 5e-56 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 160 / 6e-48 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 145 / 6e-43 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 136 / 1e-38 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 132 / 3e-37 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 129 / 3e-37 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 130 / 9e-37 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 129 / 4e-36 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10025834 [exp] 127 / 4e-35 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085700 [exp] 182 / 8e-56 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 160 / 2e-47 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 149 / 2e-43 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 146 / 1e-42 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 145 / 3e-42 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 145 / 2e-41 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 139 / 5e-40 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 139 / 2e-39 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 138 / 4e-39 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 131 / 2e-36 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10034949 pacid=23181440 polypeptide=Lus10034949 locus=Lus10034949.g ID=Lus10034949.BGIv1.0 annot-version=v1.0 ATGGCAGCTCATTCGAATTCGGAGTCAACCACTTACTCTTGCAACATCATTAACTCCCCATCCTCGCCCTCCACTCCTTCATCTTCTTCCACCGCCAAAA CCAACCCAGAAACTGAACAACTACCCAAACCGAATAAACTGAAGCGCGGGAGAGAAGGAGACTGTGGCGGAGGCGGAAGCGGAAGCAAGCACCCGGTATA CAGAGGAGTGAGAATGCGAACGTGGGGGAAATGGGTTTCCGAGATTCGGGAGCCCCGCAAGAAGAGCCGCATCTGGTTGGGCACTTTTGCCACTCCCGAA ATGGCGGCGCGTGCACACGACGTCGCAGCTTTGTCCATCAAAGGCGGCGCCGCCATCCTTAATTTCCCCCGCCTCGCCTCCTCCCTCCCCCGTCCTGTCT CCAACTCCCCTCGCGACGTTCAGGCCGCCGCCACCAAAGCTGCCTCCATCCATTTCCCCACCGCCACCAGCACTACTTCCGACGACGGTAACACCAGCAA CTGCTCCAACCTCGCCTCTTCTACCTCTGCATGTTCCTCGTCGGCAGAAGATCATCATGACCCGTCCACACCTTCCAGCTCCACTGTCGCTGCCGAGGCT GATGAGCTGTGCCAGATCGTCGACCTTCCGAAACTGGGATCTGAAGAATTTGTATTGTACGGAGACTCGTGGCTGTGTAATGATGATCAGACATGGTACG CGGATTACGGCGGCGGAGTTGGAGGATACTACTTTAGCGACGAGACGAGGCATTTAGTGACGATGGAGGAAAGTAGCAGCAGCAACTGCGGCGGCTTTGG AGCCTTTTTTGTGGAAACATTAGTTAGTTACTCTATTATTATTATAAAGTTAATTACTGATATTAATTACTGTTACTATATACGTACTCCTTACACCATT CTCAGTCGTGGTTTTTCACTCCATTTTCAAAAGTAG
AA sequence Show only first row Show all	>Lus10034949 pacid=23181440 polypeptide=Lus10034949 locus=Lus10034949.g ID=Lus10034949.BGIv1.0 annot-version=v1.0 MAAHSNSESTTYSCNIINSPSSPSTPSSSSTAKTNPETEQLPKPNKLKRGREGDCGGGGSGSKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATPE MAARAHDVAALSIKGGAAILNFPRLASSLPRPVSNSPRDVQAAATKAASIHFPTATSTTSDDGNTSNCSNLASSTSACSSSAEDHHDPSTPSSSTVAAEA DELCQIVDLPKLGSEEFVLYGDSWLCNDDQTWYADYGGGVGGYYFSDETRHLVTMEESSSSNCGGFGAFFVETLVSYSIIIIKLITDINYCYYIRTPYTI LSRGFSLHFQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034949 [exp]	0	1
					Lus10012972 [exp]	4.9	0.8944
AT5G07720			Galactosyl transferase GMA12/M...		Lus10015721 [exp]	8.4	0.8849
AT2G34590			Transketolase family protein (...		Lus10023304 [exp]	9.6	0.9007
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10013715 [exp]	11.4	0.8940
AT1G75780		TUB1	tubulin beta-1 chain (.1)		Lus10021094 [exp]	11.8	0.8830
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10035235 [exp]	12.8	0.8675
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	13.0	0.8883
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	30.2	0.8731
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	31.7	0.8778
AT5G55940		EMB2731	embryo defective 2731, Unchara...		Lus10043155 [exp]	36.4	0.8013

Compare expression of checked genes

Lus10034949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.