Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25890 141 / 4e-39 AP2_ERF CRF11 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) AT1G68550 140 / 5e-39 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT1G25470 88 / 8e-20 AP2_ERF CRF12 cytokinin response factor 12, AP2 domain-containing transcription factor family protein (.1.2) AT4G23750 81 / 8e-17 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT1G49120 77 / 9e-16 AP2_ERF CRF9 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) AT5G53290 76 / 3e-15 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT3G61630 76 / 3e-15 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT4G27950 76 / 4e-15 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G11140 74 / 8e-15 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT5G44210 70 / 5e-14 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021678 [exp] 615 / 0 AT3G25890 154 / 4e-44 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10034316 [exp] 343 / 9e-118 AT1G68550 151 / 2e-43 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10041456 [exp] 319 / 3e-108 AT1G68550 146 / 3e-41 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027573 [exp] 80 / 2e-16 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10033938 [exp] 78 / 6e-16 AT4G23750 201 / 6e-62 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10017550 [exp] 76 / 3e-15 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10019414 [exp] 73 / 9e-15 AT1G15360 207 / 1e-67 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1) Lus10014054 [exp] 73 / 1e-14 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10039324 [exp] 72 / 7e-14 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120100 [exp] 284 / 7e-95 AT3G25890 124 / 4e-33 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G125600 [exp] 277 / 1e-91 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.015G054500 [exp] 80 / 1e-16 AT1G49120 61 / 4e-10 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) Potri.001G094800 [exp] 78 / 6e-16 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.013G158500 [exp] 77 / 2e-15 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.003G136300 [exp] 76 / 3e-15 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.019G131300 [exp] 74 / 1e-14 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.002G167400 [exp] 74 / 1e-14 AT4G27950 162 / 3e-47 cytokinin response factor 4 (.1) Potri.017G013700 [exp] 71 / 2e-14 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.015G023200 [exp] 71 / 1e-13 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035018 pacid=23162555 polypeptide=Lus10035018 locus=Lus10035018.g ID=Lus10035018.BGIv1.0 annot-version=v1.0 ATGAAGCGAATCTTGCCTTCTGAAGACTCCCTAATGGGGTCAAAGGTTCGGAAAGTCCGTGTCATCTATCAGGATCCTTATGCTACTGATACAGATTCCA GTGACGATGAATCGAAGCACTCCATTCAAGCTTTGAAGAAACCAAGACGATTTGTTCGTGAGATTAGTCTCCCTGCCGTGAGTGGTGCTGTATCTCCATC CAACACTGGTGAGCAGCAGGAATCATCCTCTCAAGATAGTAATAACAGTGTCAAGAACCCCGTGAGGAAGAGAAGGGCTTGTGCTGCCACTGGTTCGGTA TCGAAGACTGGACCGAAGATGCCTGTAGGTGTTAGGCAGAGGAAGTGGGGGAAATGGGCTGCGGAGATTCGCAACCCTCACACCAAATCGAGACAATGGC TGGGTACTTTCAGCACTCTAGAGGAGGCTGCTCAAGCTTACGAGGACAAGAAGAGAGAATATGATGCTGCATTGGCCATGGAAGGCTCCCAGAAGAACGA GTCTTCCCCAACTACAAGCAAAAACCAGCCTTTCAGTGGTTCCACTACTGATAATGACTCTGAGAGTGTTCTGTCCCATACTTCACCAGCTTCAGTCCTT GAACTGGACACCTCGGTGGTATCAAACTCGAATAATGAGGATTTGAACAAGAAAGATGATGGCTTTGGCTTGCTGGAAGAGGAGGGTTTACAAGCAATTG GTATAGTTGCAGACCTTGAGATACCTGATTTGAGCTTCATTGATGAAGCATTTGTGTCCTCTTCTTGCCCTCCGGTGAATGAAGACCTGGACTTGGGTCT TGACTTCACCAACGTCATCGACGAGTTCGGCCGGATGTACGAGGATTACTGTGGGATCGACACGGATCAGCTCGACCTCCTCGGATTCGAAGGAGACATG ATACCAACTGAGCTTCCGGATTTCGATTTCGACTTCAGCAACGAGGAGTTTGCCTATTTGGATGATCATCATCAACAACCACAACCCCTCAACATCGCTT GCCCATAA
AA sequence Show only first row Show all	>Lus10035018 pacid=23162555 polypeptide=Lus10035018 locus=Lus10035018.g ID=Lus10035018.BGIv1.0 annot-version=v1.0 MKRILPSEDSLMGSKVRKVRVIYQDPYATDTDSSDDESKHSIQALKKPRRFVREISLPAVSGAVSPSNTGEQQESSSQDSNNSVKNPVRKRRACAATGSV SKTGPKMPVGVRQRKWGKWAAEIRNPHTKSRQWLGTFSTLEEAAQAYEDKKREYDAALAMEGSQKNESSPTTSKNQPFSGSTTDNDSESVLSHTSPASVL ELDTSVVSNSNNEDLNKKDDGFGLLEEEGLQAIGIVADLEIPDLSFIDEAFVSSSCPPVNEDLDLGLDFTNVIDEFGRMYEDYCGIDTDQLDLLGFEGDM IPTELPDFDFDFSNEEFAYLDDHHQQPQPLNIACP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10035018 [exp]	0	1
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	1.0	0.9679
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10035017 [exp]	2.0	0.9497
AT1G68552		CPuORF53	conserved peptide upstream ope...		Lus10021677 [exp]	3.9	0.9295
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	5.3	0.8687
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10000002 [exp]	5.6	0.8527
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	6.0	0.8971
AT5G52920		PKP-BETA1, PKP2...	PLASTIDIAL PYRUVATE KINASE 2, ...		Lus10039316 [exp]	8.5	0.8827
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10004978 [exp]	11.2	0.8931
AT5G41270			unknown protein		Lus10030018 [exp]	11.7	0.8577
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10032094 [exp]	16.5	0.8523

Compare expression of checked genes

Lus10035018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.