Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68670 276 / 7e-91 GARP myb-like transcription factor family protein (.1) AT1G25550 275 / 2e-90 GARP myb-like transcription factor family protein (.1) AT1G13300 244 / 3e-78 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT2G03500 184 / 2e-54 GARP Homeodomain-like superfamily protein (.1) AT3G25790 129 / 3e-34 GARP myb-like transcription factor family protein (.1) AT4G37180 108 / 1e-26 GARP Homeodomain-like superfamily protein (.1.2) AT1G49560 108 / 1e-26 GARP Homeodomain-like superfamily protein (.1) AT5G58080 74 / 2e-14 GARP ARR18 response regulator 18 (.1) AT3G16857 72 / 9e-14 GARP ARR1 response regulator 1 (.1.2) AT4G28610 71 / 2e-13 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021699 [exp] 557 / 0 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10043304 [exp] 191 / 3e-56 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10041485 [exp] 176 / 5e-51 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10034280 [exp] 166 / 3e-48 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10012056 [exp] 154 / 2e-43 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10019452 [exp] 139 / 2e-36 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 128 / 2e-33 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 125 / 4e-33 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 121 / 9e-32 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G117500 [exp] 325 / 1e-109 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 318 / 1e-106 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 171 / 6e-49 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 169 / 5e-48 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 166 / 1e-47 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.007G039400 [exp] 133 / 1e-35 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 127 / 3e-33 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.004G144800 [exp] 125 / 2e-32 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.010G105600 [exp] 72 / 2e-13 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G111300 [exp] 71 / 5e-13 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035043 pacid=23162452 polypeptide=Lus10035043 locus=Lus10035043.g ID=Lus10035043.BGIv1.0 annot-version=v1.0 ATGGATTTTCCTGATCAGAAGAAGCGCAGCAACGAGTACGTCGGCGCCTTGGAGGAAGAGCGTCGCAAGATTATGATGTTCCAGCGTGAACTCCCTCTTT CTTTGGAGCTCGTTACCCAAGCGATCGAAGCTTGTCGGAGAGAGCTTTCCGGTACAACGACGGAACACGATAAATCCGACTGCTCCGAGCAGACCTCCGG AGAATGCCCTGTGACTGAAGAATTCATCCCTATTATTAAGCCAAACAGTTCCTCCTGCGATGGTGAGGACGAAAATGAGAATGATTATGAGAAGAAACGG CCACTGAAACGAACCAGAAGCAAATCCGACTGGCTGAGATCTGTTCAGCTGTGGAACCAACCACCAGATCCGCCATCGCCGAATCAGGCTGTGCCGAGGA AGGCACTGGTAACGGAGGTGAAGAGGAATGGCGCATTTCAGCGTTTCCAGAAAGAGAAAAGCAACGGTGACGATAACATCACGGTGGTGCCTGCGGCGGT TGTTTCCGCACCTCCATCCAAGGTTCTGTTGCCCTCGGCCATGAGTTCTACGGCTGACGCGACACCTACCGCTGCGGGGACCAGCAGCGTCGTCAGCGAC GGCGGAAACAAACAAAAAGAGGACGAGGATAAAGAAGGGCAAGGTAAAAGAAAACGTAGGCGATGCTGGTCTCCAGAACTTCACAGAAGATTCCTTCACG CTCTCCAACAGCTCGGCGGTTCATACGTGGCAACTCCGAAGCAAATTAGGGAGCTCATGAAGGTAGATGGGCTCACTAATGATGAGGTTAAGAGCCATTT GCAGAAATTCCGCTTGCACACAAGGCGACCAAGTCACGGCGTCCAAAACGGTTGCAACCCGGCAGGAGGCCCACAGTTTGTAGTCGTCGGCGGGATATGG GTCCCGCCGTCCATTCCGGATGCTCCGGCGCCGGTTGATACAGCTGAAAAGCAGCCGGGTGGCAATTCAGATGATGACTTGCTACCTGAAGGGAGTGAAG AGGTTGGAGATCGTTCTTGTTCTCCGAGCACGTCTTCCTCTATCCACCATACGCCGACTAGCTCGTCGGCGTTGTAA
AA sequence Show only first row Show all	>Lus10035043 pacid=23162452 polypeptide=Lus10035043 locus=Lus10035043.g ID=Lus10035043.BGIv1.0 annot-version=v1.0 MDFPDQKKRSNEYVGALEEERRKIMMFQRELPLSLELVTQAIEACRRELSGTTTEHDKSDCSEQTSGECPVTEEFIPIIKPNSSSCDGEDENENDYEKKR PLKRTRSKSDWLRSVQLWNQPPDPPSPNQAVPRKALVTEVKRNGAFQRFQKEKSNGDDNITVVPAAVVSAPPSKVLLPSAMSSTADATPTAAGTSSVVSD GGNKQKEDEDKEGQGKRKRRRCWSPELHRRFLHALQQLGGSYVATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSHGVQNGCNPAGGPQFVVVGGIW VPPSIPDAPAPVDTAEKQPGGNSDDDLLPEGSEEVGDRSCSPSTSSSIHHTPTSSSAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68670	GARP		myb-like transcription factor ...		Lus10035043 [exp]	0	1
AT1G25550	GARP		myb-like transcription factor ...		Lus10021699 [exp]	2.0	0.9292
AT4G37680		HHP4	heptahelical protein 4 (.1.2)		Lus10011713 [exp]	3.0	0.9051
AT4G28365		AtENODL3	early nodulin-like protein 3 (...		Lus10018617 [exp]	3.3	0.8524
AT3G47420		AtG3Pp1, ATPS3	Glycerol-3-phosphate permease ...		Lus10031153 [exp]	3.7	0.9103
AT1G08650		ATPPCK1, PPCK1	phosphoenolpyruvate carboxylas...		Lus10011824 [exp]	4.2	0.8672
AT1G23110			unknown protein		Lus10007928 [exp]	4.6	0.8657
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10038368 [exp]	4.6	0.8275
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10043272 [exp]	6.3	0.8999
AT5G49600			Protein of unknown function, D...		Lus10037804 [exp]	7.5	0.8460
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Lus10019415 [exp]	7.7	0.8802

Compare expression of checked genes

Lus10035043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.