Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25560 237 / 6e-76 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G68840 232 / 2e-74 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G13260 231 / 6e-74 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 231 / 6e-74 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G50680 116 / 6e-30 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G51120 108 / 9e-27 AP2_ERF AP2/B3 transcription factor family protein (.1) AT2G47520 66 / 8e-13 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 66 / 2e-12 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G03800 64 / 1e-11 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT4G23750 63 / 4e-11 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003037 [exp] 66 / 2e-12 AT2G46310 122 / 8e-34 cytokinin response factor 5 (.1) Lus10026477 [exp] 64 / 2e-11 AT4G36920 298 / 3e-98 FLORAL MUTANT 2, FLOWER 1, APETALA 2, Integrase-type DNA-binding superfamily protein (.1.2) Lus10019905 [exp] 64 / 3e-11 AT2G28550 306 / 6e-99 TARGET OF EARLY ACTIVATION TAGGED \(EAT\) 1, related to AP2.7 (.1.2.3) Lus10014655 [exp] 62 / 8e-11 AT3G23240 202 / 3e-65 ethylene response factor 1 (.1) Lus10031526 [exp] 61 / 1e-10 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10032353 [exp] 61 / 2e-10 AT4G23750 207 / 2e-64 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10039857 [exp] 59 / 4e-10 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 59 / 5e-10 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10013186 [exp] 60 / 7e-10 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G129200 [exp] 259 / 5e-84 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 249 / 8e-81 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.006G186301 [exp] 127 / 7e-34 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 123 / 2e-32 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.010G006800 [exp] 65 / 6e-12 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.013G101100 [exp] 64 / 6e-12 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.013G158500 [exp] 65 / 1e-11 AT4G27950 124 / 1e-32 cytokinin response factor 4 (.1) Potri.003G136300 [exp] 65 / 2e-11 AT4G11140 160 / 1e-46 cytokinin response factor 1 (.1) Potri.012G032900 [exp] 65 / 2e-11 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.015G023200 [exp] 64 / 4e-11 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035059 pacid=23162431 polypeptide=Lus10035059 locus=Lus10035059.g ID=Lus10035059.BGIv1.0 annot-version=v1.0 ATGGAAGGCATCAGTTCATCTTCCACCACCGACGACAGCACAACCACAACCACCACCACCACCACCCCCGTCGTCGCAAAGTCTCCCCCTCGGGAGTCCC TCTGTCGGGTTGGAAGCGGCGCCAGTAGCGTAGTACTCGACCCGGAGTCCGAGATCGAAGCAGCCGAATCCCGTAAACTCCCTTCCTCCAAATACAAAGG AGTCGTCCCGCAACCCAACGGCCGATGGGGCTCACAGATTTACGAGAAGCACCACCGCGTATGGCTCGGCACTTTCAACGACGAGGACTCCGCCGCTCGC GCCTATGACGTCGCCGTCCTCCGCTTCCGCGGCCGCGACGCCGTCACCAATTTCAACCCTCCTCCGACTGCATCGTCATCCGAGGAGGCCGCGTTTCTCA ACGCCCATTCCAAGGCCGAGATCGTCGACATGCTGAGGAAGCACACCTACGACGACGAGCTGGAACAGAGCCGCCGCCAAGGGCAAAAACAGAGCCATCA TTTAAATCAAAATAATGCACTCGGGTCGACAGGGTCGGGTGGGGCCTCCCTGGAGGATCTGTTCGAGAAGGCGGTGACTCCGAGCGACGTTGGGAAACTA AACCGGTTGGTGATCCCTAAGCAGCAGGCGGAGAAGCATTTCCCGATACAGGGCCGGGGCGGCCGCGGGGGGGGGGGGGGGGGGGGGGGGGGTACTGTTG AATTTCAAGGACGGCGAGGGGAAAGTGTGGAGATTTCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGTTGACGAAAGGGTGGAGCCGTTTTGTGA AGGAGAAGGGTTTGAGAGCCGGCGACATTGTGAGGTTCCAAAGATCCGGGGAGGAGCAGCAGCTCTACATTGGCTTCTCCAAGTCAACGGAGTTGGATCG GGGTTCGGTCGAACCGGTTCAGATGGTTCGGTTGTTTGGGGTCAATATATTTGA
AA sequence Show only first row Show all	>Lus10035059 pacid=23162431 polypeptide=Lus10035059 locus=Lus10035059.g ID=Lus10035059.BGIv1.0 annot-version=v1.0 MEGISSSSTTDDSTTTTTTTTTPVVAKSPPRESLCRVGSGASSVVLDPESEIEAAESRKLPSSKYKGVVPQPNGRWGSQIYEKHHRVWLGTFNDEDSAAR AYDVAVLRFRGRDAVTNFNPPPTASSSEEAAFLNAHSKAEIVDMLRKHTYDDELEQSRRQGQKQSHHLNQNNALGSTGSGGASLEDLFEKAVTPSDVGKL NRLVIPKQQAEKHFPIQGRGGRGGGGGGGGGTVEFQGRRGESVEISVLVLEQQPELRVDERVEPFCEGEGFESRRHCEVPKIRGGAAALHWLLQVNGVGS GFGRTGSDGSVVWGQYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	0	1
AT1G34300			lectin protein kinase family p...		Lus10028711 [exp]	5.5	0.8317
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10027798 [exp]	6.4	0.7877
AT3G02130		TOAD2, RPK2, CL...	TOADSTOOL 2, clv3 peptide inse...		Lus10037083 [exp]	16.2	0.7871
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10001081 [exp]	19.2	0.8124
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	26.9	0.8243
AT5G62750			unknown protein		Lus10004267 [exp]	30.8	0.8247
					Lus10028245 [exp]	35.9	0.7729
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	53.9	0.8015
AT4G09990			Protein of unknown function (D...		Lus10002954 [exp]	55.7	0.7615
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10015268 [exp]	62.1	0.7894

Compare expression of checked genes

Lus10035059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.