Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46620 266 / 3e-86 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 103 / 1e-24 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G17760 99 / 3e-23 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G40010 98 / 8e-23 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28510 97 / 1e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 96 / 2e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50940 96 / 3e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 96 / 4e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 95 / 7e-22 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G50930 95 / 7e-22 BCS1 cytochrome BC1 synthesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005991 [exp] 390 / 1e-134 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030220 [exp] 292 / 4e-96 AT2G46620 603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008834 [exp] 202 / 3e-61 AT2G46620 473 / 2e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022362 [exp] 117 / 1e-30 AT2G46620 362 / 8e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10024275 [exp] 101 / 4e-24 AT3G50940 434 / 2e-149 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007391 [exp] 101 / 5e-24 AT3G50940 424 / 2e-145 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 101 / 6e-24 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 100 / 8e-24 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10006295 [exp] 92 / 3e-23 AT2G46620 132 / 2e-37 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G102300 [exp] 306 / 4e-102 AT2G46620 598 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G175600 [exp] 295 / 1e-97 AT2G46620 627 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.012G020800 [exp] 147 / 9e-41 AT2G46620 536 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G007800 [exp] 145 / 6e-40 AT2G46620 503 / 1e-175 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020500 [exp] 101 / 2e-24 AT2G18193 511 / 1e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G020600 [exp] 102 / 3e-24 AT2G18193 553 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.019G020700 [exp] 101 / 4e-24 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.019G020800 [exp] 101 / 5e-24 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 100 / 1e-23 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.009G024400 [exp] 99 / 4e-23 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10035073 pacid=23162382 polypeptide=Lus10035073 locus=Lus10035073.g ID=Lus10035073.BGIv1.0 annot-version=v1.0 ATGACCGGTCTGATTTACCTAACAAAGAAGTGGTGGAGAGTCGTGGAGGATCGGCTCCATGTCTACCAGTACTTTAAGGTTCCTGAATTCAACGCCAATG AGAACGAGCAATACCGGAGAGTCACTCTGTACCTGAATTCTCTGGAATCCATGGAGGATTCTGATTTCACCAATCTGTTTACAGGAAGAACCTCCAGCGA TATCCTCCTCCGCCTCGATCCTAATCAGGTGATTGATGACTATTTTCTCGGAGCGAGAGTTTCCTGGATTAACGGCGATGACGGCGGCGGAGGTGGTAGG ACTTTGGTTTCGAAGGTTAAAAGAGCTGACAAGCGGCGAATTCTCCGGCCTTATCTTCAGCATATCCACACCGTCTCAGACGAGCTTGACGAGAGGAAGA AGGAAGCTCTACATGAACGCAATCGAGAGACTCGGCGGAGGCGGCGGCAATCTGAAAAGCAAGCTGAAGTCAGATCTGGAGTCGTTCCACAGAGCCCGAC AGTAGTACCACCGTCTCGGCCGCGTTTGGAAGCGGAGCTACTTGTTGTAGAACCGCCAGGCACTGGAAAATCCAGCTTCGTCGCTGCCATGGCGAATTTC TTGAGATACGACGTCTACGAGATCGATCTCTCCAGAGTCAGGGACGATTCGGATCTAAAGGCGATCCTGCTTCAAACGATGAGCAGGTCAGTGATCGTGA TCGAGGATCTCGATCGGTTTCTGACGGAGAAATCAAAAGATTCAAAACCATCCGCCGTGACCCTGGCCGGTATGCTGAATTTCATGGACGGAGTTCTCAG CTCCTGCGCCGCGGAGGAGAGGATAATTTGGTTAAGGGGATTACGATAA
AA sequence Show only first row Show all	>Lus10035073 pacid=23162382 polypeptide=Lus10035073 locus=Lus10035073.g ID=Lus10035073.BGIv1.0 annot-version=v1.0 MTGLIYLTKKWWRVVEDRLHVYQYFKVPEFNANENEQYRRVTLYLNSLESMEDSDFTNLFTGRTSSDILLRLDPNQVIDDYFLGARVSWINGDDGGGGGR TLVSKVKRADKRRILRPYLQHIHTVSDELDERKKEALHERNRETRRRRRQSEKQAEVRSGVVPQSPTVVPPSRPRLEAELLVVEPPGTGKSSFVAAMANF LRYDVYEIDLSRVRDDSDLKAILLQTMSRSVIVIEDLDRFLTEKSKDSKPSAVTLAGMLNFMDGVLSSCAAEERIIWLRGLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46620			P-loop containing nucleoside t...		Lus10035073 [exp]	0	1
AT4G03030			Galactose oxidase/kelch repeat...		Lus10000704 [exp]	1.4	0.8660
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	2.4	0.8471
AT4G32250			Protein kinase superfamily pro...		Lus10002923 [exp]	4.9	0.8527
AT4G30790			unknown protein		Lus10007700 [exp]	8.1	0.8002
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009674 [exp]	10.6	0.7906
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	14.4	0.8200
AT5G42940			RING/U-box superfamily protein...		Lus10024810 [exp]	20.8	0.7569
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10018727 [exp]	22.2	0.7655
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Lus10009035 [exp]	23.4	0.7340
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10027805 [exp]	23.9	0.7096

Compare expression of checked genes

Lus10035073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.