Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24590 69 / 5e-13 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT5G13910 60 / 2e-10 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G12980 61 / 3e-10 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT5G18560 61 / 4e-10 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G28160 56 / 5e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G53170 50 / 2e-07 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G20310 51 / 3e-07 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT3G15210 49 / 1e-06 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28360 49 / 1e-06 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G28370 48 / 2e-06 AP2_ERF AtERF11 ERF domain protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017907 [exp] 174 / 1e-52 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10035129 [exp] 59 / 7e-10 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10033963 [exp] 58 / 3e-09 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10039857 [exp] 49 / 2e-06 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 48 / 3e-06 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10015415 [exp] 47 / 8e-06 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10039324 [exp] 47 / 1e-05 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10027573 [exp] 47 / 1e-05 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10026053 [exp] 46 / 1e-05 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186300 [exp] 64 / 2e-11 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.010G046600 [exp] 64 / 4e-11 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.003G161000 [exp] 60 / 4e-10 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G069300 [exp] 60 / 5e-10 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 59 / 7e-10 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G077700 [exp] 59 / 1e-09 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.008G215600 [exp] 56 / 1e-08 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.002G043300 [exp] 52 / 5e-08 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 51 / 1e-07 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.004G047600 [exp] 50 / 4e-07 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035076 pacid=23162455 polypeptide=Lus10035076 locus=Lus10035076.g ID=Lus10035076.BGIv1.0 annot-version=v1.0 ATGGAAGAAGCTTTCAGGAAACTAAACGGAATGACGACCACCTCATCACCACCGGAATATCCTTACTTATTATACCCCACTCCCACCAACCCACTTCACC GCCACCACCGCCACATCAGCAGCTGCATGAGTTCCTCCGCCACCAAGAGGACACCACCACCACCGGCGGCGGCGACCATTGCGGTTGCCAACGGCGGCGG TGGGGTCACAATAAGGTACCGGGGAGTGCGGAGGAGGCCGTGGGGAAGGTACGCTGCGGAGATAAGGGACCCGGTTTCCAAGGAGAGGCGGTGGCTGGGG ACTTTCGACACCGCGGAAGACGCCGCACGTGCTTATGACTTGGCGGCACGTAACATGCGTGGGATGAAGGCTCGCACCAACTTCGTTTACCCTTCAGACG TACCACCTTTGCCGCCGGCTGACCCTCATTGTTTCTGCAGCCATCATCATCATCGTTTTCCCCCTTTCACTCATTTCTCCAAACACCATGTCTCCACTGT TTGTTCCCCCGTGATTAACAACCATCACCACCACCACAACACTGCTTCCACCCTTCATCATCATCATCCCATTCTCGCCGCTACACCCCCGCCGCAGCTT CGGACAAACGGCGGCGAAATCGACTTTCTCAACTCATCCTCATCCTCATCCTCCACCGCCGTTAGCCTGTCGCCGCCAACCCCAGGGAGTTCTGCTGTAC CAGCGCCGTCTGAGGATAAGTACTGCATGGAGTTTTTTCCTCAAGAAGCATCTGGGTCGTCTGGGTTGCTTGAGGAAGTGATCCAGGGGTTTTTCCCCAA GCCGCCGGAGAAAGAGTTGTCGATGATCAGGAACGACGAAGCGACTTCGCATGATGTGGGGAGCTGGTCAAGATCATATGAAGGAAGAATGTTGGGTGGC GGAGATGATTATCATGGTGGATACATCAACTATTACAATCAGAGTCTGTGA
AA sequence Show only first row Show all	>Lus10035076 pacid=23162455 polypeptide=Lus10035076 locus=Lus10035076.g ID=Lus10035076.BGIv1.0 annot-version=v1.0 MEEAFRKLNGMTTTSSPPEYPYLLYPTPTNPLHRHHRHISSCMSSSATKRTPPPPAAATIAVANGGGGVTIRYRGVRRRPWGRYAAEIRDPVSKERRWLG TFDTAEDAARAYDLAARNMRGMKARTNFVYPSDVPPLPPADPHCFCSHHHHRFPPFTHFSKHHVSTVCSPVINNHHHHHNTASTLHHHHPILAATPPPQL RTNGGEIDFLNSSSSSSSTAVSLSPPTPGSSAVPAPSEDKYCMEFFPQEASGSSGLLEEVIQGFFPKPPEKELSMIRNDEATSHDVGSWSRSYEGRMLGG GDDYHGGYINYYNQSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10035076 [exp]	0	1
AT4G11900			S-locus lectin protein kinase ...		Lus10041639 [exp]	9.1	0.6564
					Lus10040421 [exp]	9.9	0.7077
AT1G35467		RALFL5	RALF-like 5 (.1)		Lus10006213 [exp]	15.0	0.6029
AT1G06645			2-oxoglutarate (2OG) and Fe(II...		Lus10033876 [exp]	17.7	0.6525
AT5G14380		AGP6	arabinogalactan protein 6 (.1)		Lus10022309 [exp]	17.7	0.6172
AT5G50220			F-box family protein (.1)		Lus10015170 [exp]	22.9	0.6502
AT1G26930			Galactose oxidase/kelch repeat...		Lus10023608 [exp]	24.7	0.6163
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006840 [exp]	25.6	0.6489
AT5G49290		ATRLP56	receptor like protein 56 (.1)		Lus10027821 [exp]	26.5	0.6485
AT2G27520			F-box and associated interacti...		Lus10004586 [exp]	32.3	0.6004

Compare expression of checked genes

Lus10035076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.