Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13910 115 / 1e-31 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT1G28160 107 / 3e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G18560 100 / 2e-24 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G12980 86 / 1e-19 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G24590 85 / 2e-19 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12890 84 / 2e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G20310 79 / 1e-17 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G53170 75 / 3e-16 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G15210 75 / 4e-16 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G50640 75 / 4e-16 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033963 [exp] 96 / 3e-23 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 86 / 3e-19 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10017907 [exp] 81 / 4e-18 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10033664 [exp] 76 / 8e-17 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10015415 [exp] 75 / 5e-16 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10029987 [exp] 70 / 4e-15 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 72 / 6e-15 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10039857 [exp] 72 / 6e-15 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10035329 [exp] 72 / 1e-14 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G077700 [exp] 125 / 6e-35 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 125 / 8e-35 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G161000 [exp] 119 / 3e-32 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G069300 [exp] 114 / 2e-30 AT1G28160 121 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.008G215600 [exp] 98 / 7e-24 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.008G186300 [exp] 89 / 4e-20 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.010G046600 [exp] 87 / 1e-19 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.005G219600 [exp] 82 / 4e-19 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.019G088000 [exp] 81 / 6e-19 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.002G043300 [exp] 79 / 4e-18 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035129 pacid=23162513 polypeptide=Lus10035129 locus=Lus10035129.g ID=Lus10035129.BGIv1.0 annot-version=v1.0 ATGAACAAGAATTCCAATGGAGGGAAGAGAGGCAAGAAGCAGCAGCAAGAGTCGGGCTCGACTGCGGCGGAGACGAGGTTTCTCGGGGTAAGGAGGAGGC CGTGGGGGAGATATGCTGCCGAGATAAGAGACCCAACTACCAAGGAAAGACACTGGCTTGGCACATTCGACACCGCTGACGAAGCTGCCCTGGCTTATGA CAGGGCTGCCCGCTCAATGCGCGGGCCCCGAGCCCGCACCAACTTTGTCTACTCCGACACTCCTGCCGGCTGCTCTGTCACCTCCATCCTGTCACCCGAC CAACAGCAGCAACAACAGAACTACAACTACAACCACAACCACCACCACGAGTTGTCTTCGATGGTCGATAATAACAACTGTAACTATTATCAGGAGGGAA TGCCCGTCGGACAAGATAATAATTACTACAGTACTAGTGGTAATATTGCTGCAACTACCAACATCAACAGTTATCATCAACAGTGTCAATATGATGAGCT GCCACCATTGCCGAGTTGCGAAGTCGGGAGCATGTCGATCAACGTGTCGTCGAATTTCGACGATGAGGATATGATCATGGGTACAACTAGTGGGTATTAC AATTTCGGGTATGACGATCGCATGACGTCGCACAGCCCACTTTTCAGCACTATGCCCTCAGTTTCCTCCGGTGATTTTGGGGGATCTTCGTCGGCTTCAT CGTCTTCAGCTTTCAATTACTTCTTCTCCAACTAA
AA sequence Show only first row Show all	>Lus10035129 pacid=23162513 polypeptide=Lus10035129 locus=Lus10035129.g ID=Lus10035129.BGIv1.0 annot-version=v1.0 MNKNSNGGKRGKKQQQESGSTAAETRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTADEAALAYDRAARSMRGPRARTNFVYSDTPAGCSVTSILSPD QQQQQQNYNYNHNHHHELSSMVDNNNCNYYQEGMPVGQDNNYYSTSGNIAATTNINSYHQQCQYDELPPLPSCEVGSMSINVSSNFDDEDMIMGTTSGYY NFGYDDRMTSHSPLFSTMPSVSSGDFGGSSSASSSSAFNYFFSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13910	AP2_ERF	LEAFY PETIOLE ...	LEAFY PETIOLE, Integrase-type ...		Lus10035129 [exp]	0	1
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031377 [exp]	5.8	0.9557
AT1G06930			unknown protein		Lus10009929 [exp]	9.5	0.9556
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10011318 [exp]	11.5	0.9502
					Lus10005393 [exp]	11.9	0.9505
AT3G19990			unknown protein		Lus10028680 [exp]	19.4	0.9392
AT5G54370			Late embryogenesis abundant (L...		Lus10033540 [exp]	19.7	0.9393
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10043142 [exp]	20.0	0.9063
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	23.0	0.9365
AT2G42850		CYP718	"cytochrome P450, family 718",...		Lus10010940 [exp]	23.5	0.9324
AT5G54370			Late embryogenesis abundant (L...		Lus10017577 [exp]	24.4	0.9385

Compare expression of checked genes

Lus10035129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.