Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30390 692 / 0 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 655 / 0 Transmembrane amino acid transporter family protein (.1) AT3G56200 371 / 2e-125 Transmembrane amino acid transporter family protein (.1) AT2G40420 355 / 3e-119 Transmembrane amino acid transporter family protein (.1) AT1G80510 340 / 1e-112 Transmembrane amino acid transporter family protein (.1) AT4G38250 88 / 2e-18 Transmembrane amino acid transporter family protein (.1) AT2G42005 76 / 8e-15 Transmembrane amino acid transporter family protein (.1) AT2G41190 75 / 4e-14 Transmembrane amino acid transporter family protein (.1) AT5G65990 57 / 1e-08 Transmembrane amino acid transporter family protein (.1) AT5G02180 56 / 3e-08 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031964 [exp] 917 / 0 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034353 [exp] 815 / 0 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 811 / 0 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 570 / 0 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10007716 [exp] 540 / 0 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 527 / 0 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10042864 [exp] 399 / 4e-136 AT3G56200 534 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10028165 [exp] 395 / 2e-134 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10003054 [exp] 358 / 2e-119 AT1G80510 663 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G106300 [exp] 789 / 0 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 759 / 0 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.002G114300 [exp] 550 / 0 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.010G181800 [exp] 412 / 7e-141 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 373 / 1e-127 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.003G011900 [exp] 336 / 7e-111 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.001G204400 [exp] 327 / 2e-107 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G075500 [exp] 80 / 1e-17 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.005G102300 [exp] 79 / 2e-15 AT4G38250 539 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G206800 [exp] 76 / 1e-14 AT2G42005 592 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10035140 pacid=23162379 polypeptide=Lus10035140 locus=Lus10035140.g ID=Lus10035140.BGIv1.0 annot-version=v1.0 ATGACTGTTGGGAACACGTCTCCTAATAGGGGAAGGAAATCTAAGAAGGGGAAGCAGGTTGATGAGAATGCTCCTTTACTTCCCCATAGGAATGAGGAAG GTGGTTTCGATGAGTTTAATGGAGCTTCATTTCCAGGAGCTGTGTTTAATTTGTCGACTACTATTGTTGGTGCTGGGATCATGGCTTTGCCCGCGACCAT GAAGGTGTTAGGCCTTGTCCTTGGGATTGCCATGATCATCTTTATGGCGTTCTTGACAGAGGCTTCGATTGAGCTCTTGCTTAGGTTTAGTCGGGTAGGC AAGTCGGCATCTTATGGTGGGCTTATGGGGGATGCCTTTGGTAAGGCTGGAAAAATTCTGTTGCAAGTTGCTGTGATGATCAACAACGTTGGTGTTCTCA TTGTATACATGATTATCATAGGTGATGTACTATCTGGAACAACTGCTGATGGGGTTCATCACCCGGGTGTTCTCGAAGGATGGTTTGGAGAAGATTGGTG GAATGGACGTACCGCTGTACTTCTTATCACAACACTAGCTGTATTTTCTCCCCTGGCCTGTCTAAAGCGAATTGACTCTTTAAGATATACATCTGCACTC TCAGTTGCTCTTGCAGTAGTATTCATTGTCATCACCATGGGGATTACTATTGTTAAGTTGATAAATGGAAGCATAATGATGCCTAGATTGCTCCCTAATG TGACGGATTTGGCGTCATTTTGGAACCTCTTCACCGTTGTTCCTGTTCTTGTCACTGCATACATCTGTCACTACAACGTTCACAGCATAGACAACGAACT TAAGGATTCGAGTCAGATAAAGCCGGTGGTGCGAACATCACTTGCTCTGTGCTCGTCAGTGTACGTGATGACGAGTGTTTTTGGCTTCCTTCTGTTTGGG GATTCGACGCTTGATGATGTGCTGGCCAACTTCAACACTGACCTCAGCATTCCTTATAGCTCACTCCTCAACGATGCTGTTCGCGTTAGTTATGCAGCTC ATCTCATGCTCGTGTTTCCAATCGTCTTCCACCCTTTACGGCTAAACATGGACGGGCTACTATTTCCCTCATCTCGGCCGTTATATCAGGACAACTTCAG GTTCGCATCAGTCACCATTGGTCTCATCTCTGTAATCTTCCTGGGTGCAAATTTCATCCCAAGCATATGGGATGCGTTCCAGTTCACGGGGGCAACAGCA GCTGTTTGCCTTGGATTCATTTTCCCAGCTTCCATTACTCTCAGGGACAGACACTATATAGCAACGTCGAAGGACAAGATGTTGTGCGTGTTTATGATTG TACTTGCGGTGGTCTCAAATGCTGTGGCGATATACAGCGATGCATATGCATTGATAAAGAAGAAGTCATCGCCCAGTGCTGCATGA
AA sequence Show only first row Show all	>Lus10035140 pacid=23162379 polypeptide=Lus10035140 locus=Lus10035140.g ID=Lus10035140.BGIv1.0 annot-version=v1.0 MTVGNTSPNRGRKSKKGKQVDENAPLLPHRNEEGGFDEFNGASFPGAVFNLSTTIVGAGIMALPATMKVLGLVLGIAMIIFMAFLTEASIELLLRFSRVG KSASYGGLMGDAFGKAGKILLQVAVMINNVGVLIVYMIIIGDVLSGTTADGVHHPGVLEGWFGEDWWNGRTAVLLITTLAVFSPLACLKRIDSLRYTSAL SVALAVVFIVITMGITIVKLINGSIMMPRLLPNVTDLASFWNLFTVVPVLVTAYICHYNVHSIDNELKDSSQIKPVVRTSLALCSSVYVMTSVFGFLLFG DSTLDDVLANFNTDLSIPYSSLLNDAVRVSYAAHLMLVFPIVFHPLRLNMDGLLFPSSRPLYQDNFRFASVTIGLISVIFLGANFIPSIWDAFQFTGATA AVCLGFIFPASITLRDRHYIATSKDKMLCVFMIVLAVVSNAVAIYSDAYALIKKKSSPSAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	2.0	0.9678
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	2.8	0.9452
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	3.7	0.9373
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	6.1	0.9264
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	6.6	0.9386
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	7.2	0.9554
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	8.0	0.9289
AT2G24240			BTB/POZ domain with WD40/YVTN ...		Lus10036274 [exp]	8.7	0.9482
AT5G49710			unknown protein		Lus10000765 [exp]	9.6	0.9523
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	12.3	0.9340

Compare expression of checked genes

Lus10035140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.