Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 191 / 3e-60 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 186 / 3e-58 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G51680 186 / 1e-57 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 185 / 3e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 183 / 6e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 181 / 2e-56 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 180 / 8e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 178 / 2e-54 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 176 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 171 / 4e-52 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034626 [exp] 496 / 5e-180 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 342 / 2e-119 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10004908 [exp] 312 / 2e-107 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 307 / 2e-105 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 291 / 5e-99 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10013595 [exp] 278 / 4e-94 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 261 / 1e-87 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 259 / 2e-86 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 257 / 8e-86 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 280 / 1e-94 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 277 / 1e-93 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 273 / 3e-92 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 268 / 8e-90 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 261 / 3e-87 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 260 / 6e-87 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 254 / 2e-84 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 232 / 5e-76 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 227 / 5e-74 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 224 / 5e-73 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035258 pacid=23162603 polypeptide=Lus10035258 locus=Lus10035258.g ID=Lus10035258.BGIv1.0 annot-version=v1.0 ATGTCTTCCTCCCAACACCCAATTTCCAAGAGGTTACAAGGCAAGGTTGCTTTCATCACCGGCGGCGCCAGCGGCATCGGCGCCTGCGCCGCCAAGCTCT TCGCCCTAAACGGCGTCAAAGTCACCATCGCCGACGTCCAGTCCGACTTGGGCCACTCCGTCGCCGAAGAAATCAGCTCCATTTCCCCTCACCCGGTCAC TTACGTCCAATGCGACGTCTCTAACGAATCAGACGTCCAGACCGCCGTAGACGGGGTCGTTTCGGCCCACGGGAAGCTGGACATCATGTACAGCAACGCG GGAATCATGGGGAAAGTCACCGGGATGCAGATCCTGACTGCGGACGGTCAGGATTTCGCCAGGGTGCTCGAAGTCAACGTGAAGGGATCGTTCCACTGCG CCAAACACGCAGCTAGAGTGATGGTCCCGCAGAAACGTGGGATCATCCTATTCACTGCGAGCAGCGTGACCGAGACTTACGGAAATGCCCCTCACGCTTA CACGGCATCCAAGGCCGCGGTGGTGGGCCTGATGAAGAACCTGTGCGTCGAATTGGGGGGCCATGGGATCCGGGTCAACTCGATTTCTCCTGATGGAGTT CCCACTCCGATGGCTATGAACGCGATGGGAATGGACCGAAAGGCGATTCAAGCGTTGGGTTCGCAGAGGGCGAGTTTGAAAGGCACGGTTCTTGACGAAA ACGACGTCGCAGAAGCGGCTCTGTACTTGGCGAGTGAGGAATCCAAGTTCGTGAGCGGGTTGAACCTTGTGGTAGATGGCGGCTACAACTTGAAGAGTGC CTAG
AA sequence Show only first row Show all	>Lus10035258 pacid=23162603 polypeptide=Lus10035258 locus=Lus10035258.g ID=Lus10035258.BGIv1.0 annot-version=v1.0 MSSSQHPISKRLQGKVAFITGGASGIGACAAKLFALNGVKVTIADVQSDLGHSVAEEISSISPHPVTYVQCDVSNESDVQTAVDGVVSAHGKLDIMYSNA GIMGKVTGMQILTADGQDFARVLEVNVKGSFHCAKHAARVMVPQKRGIILFTASSVTETYGNAPHAYTASKAAVVGLMKNLCVELGGHGIRVNSISPDGV PTPMAMNAMGMDRKAIQALGSQRASLKGTVLDENDVAEAALYLASEESKFVSGLNLVVDGGYNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10035258 [exp]	0	1
AT3G11920			glutaredoxin-related (.1)		Lus10030563 [exp]	3.5	0.9718
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10022583 [exp]	6.3	0.9646
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	7.4	0.9549
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006353 [exp]	7.5	0.9504
AT4G14640		CAM8, AtCML8	calmodulin-like 8, calmodulin ...		Lus10014709 [exp]	9.7	0.9383
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	10.4	0.9692
AT5G59100			Subtilisin-like serine endopep...		Lus10004686 [exp]	10.8	0.9680
AT2G18210			unknown protein		Lus10028324 [exp]	12.4	0.9612
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Lus10021480 [exp]	13.5	0.9541
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10000242 [exp]	14.4	0.9482

Compare expression of checked genes

Lus10035258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.