Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01170 644 / 0 BAT1 bidirectional amino acid transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034628 [exp] 833 / 0 AT2G01170 776 / 0.0 bidirectional amino acid transporter 1 (.1.2) Lus10028561 [exp] 360 / 8e-120 AT2G01170 390 / 2e-130 bidirectional amino acid transporter 1 (.1.2) Lus10039616 [exp] 350 / 3e-116 AT2G01170 401 / 5e-135 bidirectional amino acid transporter 1 (.1.2) Lus10029533 [exp] 65 / 4e-11 AT2G01170 133 / 2e-34 bidirectional amino acid transporter 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G125100 [exp] 733 / 0 AT2G01170 747 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.010G119100 [exp] 733 / 0 AT2G01170 754 / 0.0 bidirectional amino acid transporter 1 (.1.2) Potri.002G078100 [exp] 354 / 1e-117 AT2G01170 370 / 5e-123 bidirectional amino acid transporter 1 (.1.2) Potri.007G100700 [exp] 352 / 3e-117 AT2G01170 398 / 7e-134 bidirectional amino acid transporter 1 (.1.2) Potri.002G078300 [exp] 296 / 6e-97 AT2G01170 268 / 2e-86 bidirectional amino acid transporter 1 (.1.2) Potri.002G078501 [exp] 262 / 6e-83 AT2G01170 241 / 1e-74 bidirectional amino acid transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10035260 pacid=23162430 polypeptide=Lus10035260 locus=Lus10035260.g ID=Lus10035260.BGIv1.0 annot-version=v1.0 ATGTTTGTCGGGTCGGCAATGGGGGAGATTTGTTCCGCTTACCCGACCTCTGGTGGTCTCTACTACTGGAGCGCTATGCTCGCCGGCCCTTCTTGGGCAT CTTTTGCTTCTTGGATCACTGGCTGGTTCAATATAGTTGGCCAGTGGGCTGTTACAACTAGCGTTGATTTTTCGCTAGCTCAGATGATCCAGGTGATCAT TCTCCTTAGTACAGGCGGTAAGAATGGTGGTGGATACGAGGCATCAAAGTATGTAGTCATTGCTATCTATGCGGGTATTCTCTTCCTGCATGCTCTAATG AACAGCCTTCCCATTTCTTTGCTGTCCTTTTTCGGGCAGCTCGCTGCAGCTTGGAATTTGTTAGGTGTTCTTCTTCTAACAATACTCATCCCAACTGTTG CGACCGAGAGAGCAAGTTCGGAGTTTGTTTTCACGCACTTCAATACTGATAATGGGGATGGGATTAACAACAAGCTTTACATCTTTGTTCTTGGTCTTCT GATGAGCCAGTACACCCTTACAGGATATGATGCATCTGCTCATATGACGGAGGAAACGAAAAATGCAGACAAGAACGGTCCAAAGGGGATAATAAGTGCG ATCGGGATATCAGTGATATTTGGATGGTTGTACATACTTGGAATCACATATGCAGTCACAGACATCCCTTCTCTTCTGAGTAAAAACAACGATGCCGGTG GATATGCCATTGCTGAAATATTTTACCAAGCATTCAAGAGAAGGTATGGCAGTGGAGTTGGAGGGATCATTTGCTTAGGTGTCATTGCTGTTGCAATCTT CTTCTGTGGTATGAGTTCAGTAACTAGCAACTCCAGGATGGCTTATGCATTCTCCAGAGATGGAGCCATGCCATTCTCGTCGCTGTGGCACAAAGTAAAC AGCCAAGAAGTTCCAATCAATGCTGTCTGGCTCTCTGTCGTCATATCATTCTGCATGGCATTAACGTATCTTGGAAGCACAGTGGCATTCCAGGCCATGG TGTCTATAGCAACCATTGGGCTATACATTGCATACGCGTTTCCGATCTTCTTCAGGGTGACTTTGGCTCGCAAGACGTTCGTTAGGGGGGCGTTCCATTT GGGTCGCTACGGTGATCTAGTTGGTTGGATTGCTGTGATATGGGTGGTAACAATCTCAGTCCTCTTCTCATTGCCAGTAGCATACCCAATCACCATTGAG AATCTGAACTACACACCAGTAGCAGTGGGGGGTTTGTTTCTGATAGTTGTTTCGGGATGGGTTTTCAGCGCTAGGAAGTGGTTTAAAGGTCCTGTAACCA ATATAACTGTATAG
AA sequence Show only first row Show all	>Lus10035260 pacid=23162430 polypeptide=Lus10035260 locus=Lus10035260.g ID=Lus10035260.BGIv1.0 annot-version=v1.0 MFVGSAMGEICSAYPTSGGLYYWSAMLAGPSWASFASWITGWFNIVGQWAVTTSVDFSLAQMIQVIILLSTGGKNGGGYEASKYVVIAIYAGILFLHALM NSLPISLLSFFGQLAAAWNLLGVLLLTILIPTVATERASSEFVFTHFNTDNGDGINNKLYIFVLGLLMSQYTLTGYDASAHMTEETKNADKNGPKGIISA IGISVIFGWLYILGITYAVTDIPSLLSKNNDAGGYAIAEIFYQAFKRRYGSGVGGIICLGVIAVAIFFCGMSSVTSNSRMAYAFSRDGAMPFSSLWHKVN SQEVPINAVWLSVVISFCMALTYLGSTVAFQAMVSIATIGLYIAYAFPIFFRVTLARKTFVRGAFHLGRYGDLVGWIAVIWVVTISVLFSLPVAYPITIE NLNYTPVAVGGLFLIVVSGWVFSARKWFKGPVTNITV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01170		BAT1	bidirectional amino acid trans...		Lus10035260 [exp]	0	1
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	1.0	0.9710
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	2.0	0.9682
AT2G23755			unknown protein		Lus10019660 [exp]	2.8	0.9649
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	4.6	0.9580
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	6.7	0.9665
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	6.9	0.9511
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	7.3	0.9438
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	8.7	0.9485
AT3G26380			Melibiase family protein (.1)		Lus10006467 [exp]	8.8	0.9597
AT2G23790			Protein of unknown function (D...		Lus10016799 [exp]	9.5	0.9648

Compare expression of checked genes

Lus10035260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.