Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32460 231 / 3e-69 MYB ATMYB101, AtM1 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) AT4G26930 206 / 1e-60 MYB ATMYB97 myb domain protein 97 (.1) AT5G55020 204 / 8e-59 MYB ATMYB120 myb domain protein 120 (.1) AT5G06100 202 / 2e-58 MYB ATMYB33 myb domain protein 33 (.1.2.3) AT3G11440 203 / 4e-58 MYB AtMYB65 myb domain protein 65 (.1) AT2G26960 184 / 4e-52 MYB ATMYB81 myb domain protein 81 (.1) AT4G28110 154 / 2e-42 MYB ATMYB41 myb domain protein 41 (.1) AT4G21440 154 / 4e-42 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT3G61250 153 / 5e-42 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G13480 152 / 5e-42 MYB ATMYB79 myb domain protein 79 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027189 [exp] 870 / 0 AT2G32460 243 / 1e-73 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10008685 [exp] 216 / 1e-61 AT3G11440 357 / 3e-115 myb domain protein 65 (.1) Lus10026142 [exp] 220 / 2e-61 AT3G11440 370 / 5e-115 myb domain protein 65 (.1) Lus10026787 [exp] 210 / 3e-61 AT3G11440 301 / 4e-96 myb domain protein 65 (.1) Lus10036103 [exp] 209 / 8e-61 AT3G11440 307 / 1e-98 myb domain protein 65 (.1) Lus10040063 [exp] 206 / 6e-60 AT2G32460 229 / 1e-69 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10021539 [exp] 206 / 2e-58 AT2G32460 226 / 5e-67 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Lus10027459 [exp] 157 / 9e-44 AT3G61250 229 / 3e-74 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039214 [exp] 157 / 1e-43 AT3G61250 226 / 7e-73 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G228700 [exp] 293 / 7e-93 AT2G32460 234 / 6e-71 ARABIDOPSIS THALIANA MYB 1, myb domain protein 101 (.1.2) Potri.003G189700 [exp] 219 / 5e-64 AT5G06100 410 / 8e-138 myb domain protein 33 (.1.2.3) Potri.001G036000 [exp] 213 / 1e-61 AT5G06100 402 / 1e-134 myb domain protein 33 (.1.2.3) Potri.001G224500 [exp] 207 / 6e-60 AT3G11440 298 / 1e-94 myb domain protein 65 (.1) Potri.009G018700 [exp] 206 / 1e-59 AT5G06100 286 / 1e-90 myb domain protein 33 (.1.2.3) Potri.013G130900 [exp] 189 / 3e-52 AT5G06100 177 / 1e-48 myb domain protein 33 (.1.2.3) Potri.012G140700 [exp] 157 / 1e-43 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.010G064000 [exp] 156 / 2e-43 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.002G157600 [exp] 157 / 3e-43 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.011G125900 [exp] 157 / 6e-43 AT4G21440 281 / 1e-92 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035275 pacid=23170485 polypeptide=Lus10035275 locus=Lus10035275.g ID=Lus10035275.BGIv1.0 annot-version=v1.0 ATGATGCAGAATGATGTTGTGGAGCACGATGACGAGAGCGGAGGGGGAGGAGCGGCGACAATGGTGGTGGTGGCTGGCGGTGGCGGTGGCGGTGGGCAGA GGAAGGGGAACTTGCAGGGGCTGAAGAAAGGGCCGTGGACGGCGGCGGAGGATGCGATTCTGACGGAGTATGTGAGGAGGCGCGGTGAAGGGAATTGGAA TTCTGTGCAGAAGAATTGTGGGTTGATGCGTTGTGGGAAGAGCTGTCGTCTCCGGTGGGCGAATCATCTCCGGCCGAATTTGAAGAAGGGGGCGTTTACC CCGGAGGAGGAGCGTGTGATCATTGAGCTACATTTCAAATATGGCAACAAATGGGCTCGTATGGCCACCCAGTTACCGGGAAGAACGGATAATGAGATAA AAAACTACTGGAACACGAGGATGAAGCGACGGCATCGGGCTGGACTGCCGATGTACCCACGGGAGTTCTTGGACCAGACGGCTTCATTTCACATGCAGCA ACGGCAGCAACAAGAACATAATTTCATAGACCATAACAATAATATGAAACCATCGTCGTCTCTGTTCTCGGTGTTCTGTAAGGCGACGACGCCGGATTAC AACCCTTGTGATTTTTCCCTCTCCGCCGACAAGCTGGCGGATTTCTCCTCCTCTGCTCCCGGCGCCGGTGAGTCTTACCAAGGGCATAATAGTCATCACA ACAATCTCATTTGCTCCACTAATTACCACCAACACCAGCAACAACAATACATAAACTCTCAGAACGGTGTCGTCTTGGCTCCTCTGTCACTTTCCCCTCC TGTAGTTTCCGCATTTGCCCCTCCCCAACAGTTGATAGTTTTCGGTCAGAGCTCTGCTTCTCCGGCGATTGATCAACTCCACGGCGGAGGTGGCGGCGGC GGCGGAGGAGGAGAGAGTTACCCCAACAATGTGATTAGCTTCACGTCGTTGATCATGGGTGATTACGAAGACCGCAATGTGGATCAGCTGGAATCATTCA GCTTCGCCTCTGCTTCAGAGCTCCCTTCACTCCAAACACCACCGCGGTCCGCCTCATCGAATGCCGCAACCAGCTGCGTCGGCCGTGGAGTTTGCATCAC GGTGGAGGAACCCGACAATGCCAATTGCAACAGCAACAGCAACAACAACGGCGGTGAGGTAGTCCGTGACGGAAATGACGAAATTAGCCACGAGGACGGT GTCCTGATCGGGGGTAACATGGTAATTGGGGACAACAACAGTGGGATGCTTGACGTGTTGCTGCAGGAGAGCAAGTCTATTATGTGCCGAAAGAGGAAAG CGGATGACCGTGATATCTCATCGCCGGCGGGTGAGGATGAAGGAAAGCGTCTCTGTAATCCGACGATGTTTCGCATCGCCGCCGGGAGCAACGAACAGCT GGCATCTGATGGTGGTTGGTGGGACCCGCGGGGTAACTTTATCTCTTCACTTGGTCATGTAGGAATGGAGCTGAAGGAAAAGGCGGAGGTGATGGCGCCA GAGGAAATGAGTTCAACGACCATAGTCGACGACGATGACTTGCTGAGCTTACTCGCCAACTTCCCTTCTTCAGTACCTCTGCCGGAGTGGTACCGTGGTC ATCACAACAACACGACCAACGACGACAACAACAACAATAGCAACAATGTCAACGACTACCAGATCTCCGGCATCGGTGGTGGTTTCAATGATCATCAAGT GTGA
AA sequence Show only first row Show all	>Lus10035275 pacid=23170485 polypeptide=Lus10035275 locus=Lus10035275.g ID=Lus10035275.BGIv1.0 annot-version=v1.0 MMQNDVVEHDDESGGGGAATMVVVAGGGGGGGQRKGNLQGLKKGPWTAAEDAILTEYVRRRGEGNWNSVQKNCGLMRCGKSCRLRWANHLRPNLKKGAFT PEEERVIIELHFKYGNKWARMATQLPGRTDNEIKNYWNTRMKRRHRAGLPMYPREFLDQTASFHMQQRQQQEHNFIDHNNNMKPSSSLFSVFCKATTPDY NPCDFSLSADKLADFSSSAPGAGESYQGHNSHHNNLICSTNYHQHQQQQYINSQNGVVLAPLSLSPPVVSAFAPPQQLIVFGQSSASPAIDQLHGGGGGG GGGGESYPNNVISFTSLIMGDYEDRNVDQLESFSFASASELPSLQTPPRSASSNAATSCVGRGVCITVEEPDNANCNSNSNNNGGEVVRDGNDEISHEDG VLIGGNMVIGDNNSGMLDVLLQESKSIMCRKRKADDRDISSPAGEDEGKRLCNPTMFRIAAGSNEQLASDGGWWDPRGNFISSLGHVGMELKEKAEVMAP EEMSSTTIVDDDDLLSLLANFPSSVPLPEWYRGHHNNTTNDDNNNNSNNVNDYQISGIGGGFNDHQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32460	MYB	ATMYB101, AtM1	ARABIDOPSIS THALIANA MYB 1, my...		Lus10035275 [exp]	0	1
AT2G42000		AtMT4a	Arabidopsis thaliana metalloth...		Lus10022998 [exp]	2.8	0.8154
AT1G66370	MYB	ATMYB113	myb domain protein 113 (.1)		Lus10009129 [exp]	8.4	0.8330
AT2G31500		CPK24	calcium-dependent protein kina...		Lus10025570 [exp]	9.7	0.7748
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	13.1	0.8132
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	14.8	0.7976
					Lus10033891 [exp]	19.5	0.6971
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033787 [exp]	19.6	0.7945
					Lus10039965 [exp]	21.5	0.7853
AT1G21130		IGMT4	indole glucosinolate O-methylt...		Lus10030187 [exp]	24.0	0.7832
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	24.5	0.7459

Compare expression of checked genes

Lus10035275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.