Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76160 736 / 0 SKS5 SKU5 similar 5 (.1) AT4G22010 722 / 0 SKS4 SKU5 similar 4 (.1) AT1G41830 701 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT1G21850 688 / 0 SKS8 SKU5 similar 8 (.1) AT1G21860 679 / 0 SKS7 SKU5 similar 7 (.1) AT4G38420 668 / 0 SKS9 SKU5 similar 9 (.1) AT4G28090 628 / 0 SKS10 SKU5 similar 10 (.1) AT5G66920 588 / 0 SKS17 SKU5 similar 17 (.1) AT3G13400 533 / 0 SKS13 SKU5 similar 13 (.1) AT1G55570 528 / 0 SKS12 SKU5 similar 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030045 [exp] 960 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10020022 [exp] 726 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10005649 [exp] 725 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10015545 [exp] 723 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10034560 [exp] 713 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10021238 [exp] 707 / 0 AT1G76160 892 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 682 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1) Lus10016770 [exp] 634 / 0 AT5G66920 837 / 0.0 SKU5 similar 17 (.1) Lus10022648 [exp] 623 / 0 AT1G21850 729 / 0.0 SKU5 similar 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G154500 [exp] 865 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.002G227600 [exp] 862 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G010100 [exp] 748 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.004G180500 [exp] 746 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 733 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 724 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.007G038300 [exp] 635 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.001G000500 [exp] 559 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.007G038200 [exp] 545 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.003G224100 [exp] 537 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10035282 pacid=23170488 polypeptide=Lus10035282 locus=Lus10035282.g ID=Lus10035282.BGIv1.0 annot-version=v1.0 ATGGGTTGTGGGTTTTGGGTGCTGGTTGTGCTGTTGCTGGGTTTAGTGAGTTTTAGCAGTGGGGAATCACCTTATAGATTCTACAACTGGAATGTTACTT ATGGCGACATATACCCACTTGGTGTGAAGCAGCAAGGGATCTTGATCAATGGACAGTTTCCAGGGCCACCGATTGAAGCTGTCACCAATGACAATCTTAT TGTCAGCGTCTTCAACAGCTTGGATGAGCCTTTCCTCATCTCCTGGAATGGAGTGCAGCAGAGGAGGAACTCATGGCAAGATGGAGTATATGGAACAAAC TGCCCAATCCCACCAGGGACAAACTTCACTTATGTGCTTCAAGTGAAGGACCAGATCGGCAGCTACTTCTACTTCCCTTCCCTTGGAATGCACAAGGCTG CTGGTGGCTATGGTGGCATCAAAATCCACAGCCGCCCTGCCATCCCTATCCCCTTTGATGCTCCTGCTGGTGATTTCACATTTCTTGCTGGTGACTGGTA CAAAATGAACCACACTGATCTCAAAGCAACTTTGGATGGTGGAAATTTGCTTCCTCCTCTCCCTGATGGGATCCTCATCAATGGCCTTGGTTCCAATGGC TATACTTTCACTGTTGATCAAGGCAAGACTTACAGGTTCAGGATCTCGAACGTGGGGATCACGACAGGACTCAACTTCAGAATCCAAGGCCACAAGATGA AGCTTATCGAAGTTGAAGGAACTCACACGCTTCAGAACACTTACGACTCGCTCGACATCCACTTAGGCCAATCATATTCGGTCCTAGTCACAGCAGACCA GCCTCCTCAGGACTACTACATTGTAGTCTCAACAAGGTTCACTCCCCAAGTCCTGACCGCAACCTCGATTCTCCACTACACCAATTCCGCAGCTGGAATA CAGGGCGCCCCTCCCGGTGGGCCCACCATCCAGATCGACTGGTCGCTCGAACAGGCCCGGTCGTTCAGGAGGAACCTGAGTGCCAGCGGACCGAGGCCTA ACCCTCAGGGATCATACCATTACGGTATGATCAACACGACACGTAACGTGAGGGTTCAGAACTCGGCTCCCGTGATTAATGGGAAGCAGAGATATGCTGT GAATAGTGTGTCGTTTGTACCTGGTGACACTCCGTTGAAGCTGGCTGATCATTTCAACATTGGTGGTGTTTTCTCCCTTGGTAGCATCCCTGATAATCCG ACCGGTGGGGGCGGTTATCTCACAACATCGGTCATGGCTGCTGATTTTCGAGGGTTCGCTGAGTTCGTGTTCGAGAACACAGAGGATTCTGTCCAGTCTT GGCACATTGATGGCCACAACTTCTTTGTTGTTGGGATGGATGGAGGGCAATGGTCACCTGATAGCAGATTGAACTACAACTTGAGGGACACCATCTCTCG TTGCACTGTTCAGGTGTATCCACAGTCATGGACCGCGATCTACATGCCACTGGACAACGTTGGGATGTGGAACGTGCGGTCCGAGAACTGGGTCCGGCAG TACTTGGGACAGCAGTTCTACCTACGGGTTTATTCTCCGGCGAATTCGTGGAGGGACGAGTACCCGATCCCGAGCAATGCTCTTCGATGTGGCCGAGCCG TCGGCCTCTGA
AA sequence Show only first row Show all	>Lus10035282 pacid=23170488 polypeptide=Lus10035282 locus=Lus10035282.g ID=Lus10035282.BGIv1.0 annot-version=v1.0 MGCGFWVLVVLLLGLVSFSSGESPYRFYNWNVTYGDIYPLGVKQQGILINGQFPGPPIEAVTNDNLIVSVFNSLDEPFLISWNGVQQRRNSWQDGVYGTN CPIPPGTNFTYVLQVKDQIGSYFYFPSLGMHKAAGGYGGIKIHSRPAIPIPFDAPAGDFTFLAGDWYKMNHTDLKATLDGGNLLPPLPDGILINGLGSNG YTFTVDQGKTYRFRISNVGITTGLNFRIQGHKMKLIEVEGTHTLQNTYDSLDIHLGQSYSVLVTADQPPQDYYIVVSTRFTPQVLTATSILHYTNSAAGI QGAPPGGPTIQIDWSLEQARSFRRNLSASGPRPNPQGSYHYGMINTTRNVRVQNSAPVINGKQRYAVNSVSFVPGDTPLKLADHFNIGGVFSLGSIPDNP TGGGGYLTTSVMAADFRGFAEFVFENTEDSVQSWHIDGHNFFVVGMDGGQWSPDSRLNYNLRDTISRCTVQVYPQSWTAIYMPLDNVGMWNVRSENWVRQ YLGQQFYLRVYSPANSWRDEYPIPSNALRCGRAVGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	0	1
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	1.7	0.9492
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	2.0	0.9495
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	3.0	0.9498
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10023254 [exp]	4.9	0.9231
AT5G45590			Ribosomal protein L35 (.1)		Lus10012140 [exp]	7.5	0.9367
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10001555 [exp]	7.5	0.9119
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	9.8	0.9146
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10035658 [exp]	10.4	0.9176
AT3G17910		EMB3121, SURF1	SURFEIT 1, EMBRYO DEFECTIVE 31...		Lus10031335 [exp]	10.7	0.9165
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	11.1	0.9404

Compare expression of checked genes

Lus10035282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.