Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05760 866 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 705 / 0 Xanthine/uracil permease family protein (.1) AT5G62890 543 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT1G60030 540 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT5G49990 539 / 0 Xanthine/uracil permease family protein (.1) AT1G49960 529 / 0 Xanthine/uracil permease family protein (.1) AT2G26510 517 / 1e-179 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT1G10540 508 / 1e-176 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G65550 468 / 8e-161 Xanthine/uracil permease family protein (.1) AT5G25420 343 / 1e-113 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030014 [exp] 966 / 0 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 713 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 558 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10002787 [exp] 543 / 0 AT2G26510 748 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10034125 [exp] 543 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10032758 [exp] 541 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Lus10029191 [exp] 534 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 534 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 527 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G157800 [exp] 876 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 724 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 724 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.002G129400 [exp] 560 / 0 AT2G26510 751 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.015G072600 [exp] 556 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.012G077400 [exp] 554 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.014G035800 [exp] 550 / 0 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) Potri.010G095500 [exp] 540 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.008G146400 [exp] 538 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 501 / 9e-174 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10035311 pacid=23170522 polypeptide=Lus10035311 locus=Lus10035311.g ID=Lus10035311.BGIv1.0 annot-version=v1.0 ATGGCGGACATTACCCATTTCCCAATGGAACAACTCCAAGACCTTGAGTATTGTATAGACTCAAACCCTCCATGGGTTGAAACCATAGCATTGGCATTTC AAAACTACATACTAATGATTGGCACAAGCGTCATGATACCTTCTCTACTCATCCCCGCGATGGGGGGCAGCGATGGTGACAAGGCTAGAGTAATACAGAC CTTACTATTCGTATCCGGCATCAACACCCTTCTCCAAGCCCTCTTCGGGACTCGATTGCCAGCTGTTGTAGGAGGGTCGTACGCTTACATAATCCCCGTA GCATATATTATAAGCGACTCTTCATTGCAGCAGATTACCGACCATCATGAAAGATTCCTACATACAATGCGGGCCATCCAAGGTGCTCTAATCGTCGCTT CGAGCATTCAAATCATCCTCGGCTACAGCCAAGTATGGGGTCTCTTCTCAAGGTTCTTCAGCCCTCTTGGCATGGCGCCAGTTGTCGGATTGGTCGGCCT AGGACTATTCCAACGTGGATTTCCCGCTTATCTAAAGCATGTGAGACCATTTAGAGATGTTCCAATATTTGAAAGATTCCCTGTGCTCATCTGTGTCACC ATTGTGTGGATATATTCTGTTATCCTAACTGCCGGTGGTGCCTACCGCGAGAGGCCAGATCGAACCCAGAGAAGCTGTCGAACCGACCGAGCTAACCTCA TCTCGACCGCTCCTTGGTTCATGTTCCCGTACCCTCTCCAGTGGGGACCACCTACTTTCTCTGCTGGCCACTGCTTCGCCATGATGTCCGCTGTCCTCGT GTCCATGGTCGAGTCGACCGGAGCGTACAATGCAGCATCGCGGTTAGCCATTGCGACTCCTCCACCTGCTTATGTACTAAGCAGAGGCATTGGCTGGCAG GGGATTGGGATATTACTTGACGGACTTTTCGGAACAGGAACTGGTTCCACTGTTTCTGTTGAAAATGTCGGACTGCTGGGCCTAACTCGAGTCGGGAGCC GGAGAGTTGTCCAGATATCTGCTGGCTTCATGATCTTCTTCTCTACCTTAGGTTGGCTTTCCCATGAAAAATCTTCAAGTTCGATCAGTTTGATCCCGAG TCTTATTGCTTTCCTTCCTATTTTTGTAGGAAAATTCGGAGCTGTCTTTGCCTCTATACCTTTCCCTATCTTTGCTGCAATGTACTGTGTTCTCTTCGGA CTAGTGGGATCAGTGGGGCTGTCATTTCTGCAGTTCACTAACATGAACTCAATGAGAAACCTGATGATCACGGGGCTCTCGCTCTTCCTCGGGATCTCAA TCCCAGTGTTCTTCGATGAGTACTTAAATCCTACGAGACATGGTCTCGTCCACACAAATGCAGGCTGGGTAAAAGAAAAGCCTCTCTCAAACACATTCAA TGCGTTTGTGAACGCAATATTCCAGTCACCGGCCACGGTGGGGCTGATGGTGGCAGTGTTCCTAGACAACACGCTGGAGGTGGAAAAGTCGAAGAAGGAT AGAGGGATGCCGTGGTGGGTAAAGTTCAGAACTTTTCGAGGGGATAATAGGAACGAAGAGTTCTACACTTTGCCATTCAACCTTAACAGATTCTTCCCGC CTACTTGA
AA sequence Show only first row Show all	>Lus10035311 pacid=23170522 polypeptide=Lus10035311 locus=Lus10035311.g ID=Lus10035311.BGIv1.0 annot-version=v1.0 MADITHFPMEQLQDLEYCIDSNPPWVETIALAFQNYILMIGTSVMIPSLLIPAMGGSDGDKARVIQTLLFVSGINTLLQALFGTRLPAVVGGSYAYIIPV AYIISDSSLQQITDHHERFLHTMRAIQGALIVASSIQIILGYSQVWGLFSRFFSPLGMAPVVGLVGLGLFQRGFPAYLKHVRPFRDVPIFERFPVLICVT IVWIYSVILTAGGAYRERPDRTQRSCRTDRANLISTAPWFMFPYPLQWGPPTFSAGHCFAMMSAVLVSMVESTGAYNAASRLAIATPPPAYVLSRGIGWQ GIGILLDGLFGTGTGSTVSVENVGLLGLTRVGSRRVVQISAGFMIFFSTLGWLSHEKSSSSISLIPSLIAFLPIFVGKFGAVFASIPFPIFAAMYCVLFG LVGSVGLSFLQFTNMNSMRNLMITGLSLFLGISIPVFFDEYLNPTRHGLVHTNAGWVKEKPLSNTFNAFVNAIFQSPATVGLMVAVFLDNTLEVEKSKKD RGMPWWVKFRTFRGDNRNEEFYTLPFNLNRFFPPT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	0	1
AT4G39790			Protein of unknown function (D...		Lus10024039 [exp]	3.2	0.9107
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10010642 [exp]	4.4	0.9188
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	4.9	0.9003
AT3G49170		EMB2261	embryo defective 2261, Tetratr...		Lus10004253 [exp]	8.9	0.8595
AT1G73470			unknown protein		Lus10042285 [exp]	9.2	0.8825
AT5G59250			Major facilitator superfamily ...		Lus10040771 [exp]	9.4	0.8582
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	9.5	0.8755
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	10.6	0.8818
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	13.1	0.8584
AT2G33860	ARF	ARF3, ETT	ETTIN, AUXIN RESPONSE TRANSCRI...		Lus10005264 [exp]	13.4	0.8828

Compare expression of checked genes

Lus10035311 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.