Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44210 93 / 1e-22 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28360 90 / 9e-22 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT1G50640 91 / 1e-21 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT3G15210 91 / 2e-21 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28370 85 / 5e-20 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT1G03800 84 / 4e-19 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT1G53170 83 / 4e-19 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G20310 84 / 9e-19 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT1G12980 83 / 4e-18 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G43160 75 / 6e-16 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029987 [exp] 117 / 1e-32 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 97 / 8e-24 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10039857 [exp] 90 / 2e-21 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 89 / 4e-21 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10015415 [exp] 87 / 7e-20 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10043182 [exp] 84 / 8e-19 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10014054 [exp] 77 / 4e-16 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10035076 [exp] 75 / 3e-15 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10014345 [exp] 74 / 3e-15 AT1G12980 97 / 1e-24 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056900 [exp] 92 / 1e-22 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 92 / 2e-22 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.001G356100 [exp] 91 / 8e-22 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.004G047600 [exp] 91 / 1e-21 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.001G397200 [exp] 86 / 6e-20 AT3G15210 95 / 1e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Potri.017G013700 [exp] 86 / 1e-19 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G057000 [exp] 85 / 3e-19 AT5G44210 94 / 1e-23 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.002G043300 [exp] 83 / 3e-19 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.007G138100 [exp] 84 / 5e-19 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.011G115600 [exp] 84 / 6e-19 AT3G15210 92 / 7e-23 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10035329 pacid=23170609 polypeptide=Lus10035329 locus=Lus10035329.g ID=Lus10035329.BGIv1.0 annot-version=v1.0 ATGCGTCAACCGAGAATCCCCGCGAATCCCGCCACCGCCCCCACCAACCCAACCAATAAGGCGGTGGAGATGAAATTCCGCGGCGTCAGGAAGCGTCCTT GGGGCCGATTCGCCGCTGAGATCAGAGATCCATGGAAGAAGACGCGTGTCTGGCTGGGAACCTTCGATTCCGTCGAGGACGCAGCGCGCGCGTACGACGC CGCAGCACGTTCTTTCCGCGGAGCCGACGCCAAGACAAATTTCCCTTTGCCTGCGGCGGCCGGGCTCCCCGCGAGCACCAGCAATGGCAGCACCGAGGCG TCCCCCAACACCGCGAGCCCAGCCACCGCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACCGCCTGCGGTGGCAGTGGATG ATTGTCGTAGCGATTGCGATTCGTCGTCGACCGTCGTGGACGATGAAAATAGCAACGCTGAAGAGATTGGTTCCTCCGGTAAAACTATGCTGCCATTTGA TCTGAATTTCCCTGCTCCGGAGGTTGTTGAGAACGACGACGTCTTCGTCCAGACATGGGACATCAAAATCCATACGTTGATACGCTGTTTGCTTATCCGT GATGGGTTGATTTCGAGTCGAGCTCAAACTGAGTCCGAAACAGCTAATTTATACAATTCCTTGGAATGGTACGAACTTTTGAGCAAGAAAGAGGTTAGTA AATGGTCGCCATTGGAGACATCAGCTGCTAAGAGATGTGAAGATCGTCAAGTTAGATTTTCATCAGAGATAGGGAAGAAAGAGGTCGAAGAAGGAATCTA CAGGTGTTACAAAGAAGGTTTCTTCGGTGAATTAGAGTTATTAAGATGTAATGATTATGCTATCTTATTATAG
AA sequence Show only first row Show all	>Lus10035329 pacid=23170609 polypeptide=Lus10035329 locus=Lus10035329.g ID=Lus10035329.BGIv1.0 annot-version=v1.0 MRQPRIPANPATAPTNPTNKAVEMKFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSVEDAARAYDAAARSFRGADAKTNFPLPAAAGLPASTSNGSTEA SPNTASPATAXXXXXXXXXXXXXXXTPPAVAVDDCRSDCDSSSTVVDDENSNAEEIGSSGKTMLPFDLNFPAPEVVENDDVFVQTWDIKIHTLIRCLLIR DGLISSRAQTESETANLYNSLEWYELLSKKEVSKWSPLETSAAKRCEDRQVRFSSEIGKKEVEEGIYRCYKEGFFGELELLRCNDYAILL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10035329 [exp]	0	1
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10005201 [exp]	6.7	0.7903
AT1G57680			unknown protein		Lus10028891 [exp]	7.5	0.7667
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	10.3	0.8107
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	10.7	0.8059
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	11.8	0.8198
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10014795 [exp]	13.1	0.6770
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018328 [exp]	13.7	0.7632
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	15.0	0.7958
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	15.1	0.7598
AT4G26500		SUFE1, EMB1374,...	SULFUR E 1, MBRYO DEFECTIVE 13...		Lus10032905 [exp]	16.9	0.7852

Compare expression of checked genes

Lus10035329 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.