Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32240 206 / 2e-65 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT4G17695 145 / 1e-42 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1) AT5G16560 142 / 9e-41 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT5G42630 129 / 4e-37 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT2G38300 92 / 3e-22 GARP myb-like HTH transcriptional regulator family protein (.1) AT1G14600 88 / 3e-21 GARP Homeodomain-like superfamily protein (.1) AT2G02060 87 / 1e-20 GARP Homeodomain-like superfamily protein (.1) AT2G40260 86 / 2e-19 GARP Homeodomain-like superfamily protein (.1) AT5G45580 82 / 8e-19 GARP Homeodomain-like superfamily protein (.1) AT2G42660 81 / 1e-18 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030989 [exp] 297 / 3e-100 AT1G32240 229 / 6e-71 KANADI 2, Homeodomain-like superfamily protein (.1) Lus10032746 [exp] 132 / 3e-37 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10011660 [exp] 112 / 4e-30 AT5G42630 138 / 2e-39 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Lus10029225 [exp] 87 / 3e-21 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 87 / 1e-20 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10002207 [exp] 87 / 1e-20 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10012239 [exp] 87 / 4e-20 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 83 / 5e-20 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10040945 [exp] 85 / 2e-19 AT2G40260 159 / 2e-45 Homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G096300 [exp] 236 / 2e-77 AT1G32240 224 / 1e-69 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.001G137600 [exp] 216 / 3e-69 AT1G32240 216 / 6e-67 KANADI 2, Homeodomain-like superfamily protein (.1) Potri.017G137600 [exp] 144 / 1e-40 AT5G16560 256 / 8e-81 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.004G082400 [exp] 142 / 4e-40 AT5G16560 233 / 7e-72 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.015G031600 [exp] 137 / 1e-38 AT5G16560 176 / 1e-50 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.012G042100 [exp] 134 / 2e-37 AT5G16560 193 / 6e-57 KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) Potri.002G130200 [exp] 129 / 2e-36 AT5G42630 199 / 6e-62 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.014G037200 [exp] 128 / 9e-36 AT5G42630 209 / 6e-66 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) Potri.009G075100 [exp] 98 / 1e-24 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.011G006350 [exp] 91 / 6e-22 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035387 pacid=23170681 polypeptide=Lus10035387 locus=Lus10035387.g ID=Lus10035387.BGIv1.0 annot-version=v1.0 ATGTCGAGATTCCCAGGAAAGAGAAGCATGAGAGCTCCGAGGATGCGGTGGACTACTACCCTCCACGCCCGCTTTGTCCACGCCGTCGAGCTCTTAGGCG GCCACGCAAGAGCAACTCCCAAGTCGGTACTGGAGCTCATGGATGTCAAGGATCTAACTTTGGCTCATGTCAAATCCCATTTGCAGATGTACCGTACGGT AAAGACCACTGACAGAGCTGCTGCCACGTCAGGGCAATCAGATTTAGTTGACAACGGGTCGTCAGGAGATAACTCAGAAGATTTGATGCTGGACATTCAC AACACGTCGTCGTCTTCGTCTAGACGACCGCCGCCTGAACCATGCTCGATGATACAACAACAACAACAACAAGGAATAAGAGCACCATCGTCAGCTCTGT GGAGCAATTCTTCGAGGGAAGCTTGGTTGCGTGGGAAAACAAAGGACCCTCCTGCAAGTTTGACATCTCTTGAGCAGAAGGAAATGGATCCAAAGTGCAT GAGCTATGAGAGAATATCAGATGGAAGCTGTTCATCAAGCCAGCTTTCAGGGTCAAGAAGTCCCCAGAGACCAAATTTGGAGTTCACTTTGGGCAGGCCA CTTTGA
AA sequence Show only first row Show all	>Lus10035387 pacid=23170681 polypeptide=Lus10035387 locus=Lus10035387.g ID=Lus10035387.BGIv1.0 annot-version=v1.0 MSRFPGKRSMRAPRMRWTTTLHARFVHAVELLGGHARATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAAATSGQSDLVDNGSSGDNSEDLMLDIH NTSSSSSRRPPPEPCSMIQQQQQQGIRAPSSALWSNSSREAWLRGKTKDPPASLTSLEQKEMDPKCMSYERISDGSCSSSQLSGSRSPQRPNLEFTLGRP L

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035387 [exp]	0	1
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10035386 [exp]	1.0	0.9464
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	1.4	0.9457
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10017267 [exp]	3.5	0.8460
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10017886 [exp]	5.2	0.8381
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10040399 [exp]	5.7	0.8631
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10029125 [exp]	5.9	0.8437
AT1G74150			Galactose oxidase/kelch repeat...		Lus10031420 [exp]	6.6	0.8602
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	7.2	0.8166
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10010709 [exp]	7.7	0.8363
AT3G13620			Amino acid permease family pro...		Lus10034046 [exp]	7.7	0.8469

Compare expression of checked genes

Lus10035387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.