Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 103 / 1e-24 transmembrane receptors;ATP binding (.1.2) AT1G27180 101 / 4e-24 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 98 / 6e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17890 94 / 3e-21 CHS3, DAR4 CHILLING SENSITIVE 3, DA1-related protein 4 (.1) AT1G17600 87 / 3e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 87 / 4e-19 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 87 / 4e-19 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT3G51560 85 / 2e-18 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G11250 84 / 3e-18 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G45050 83 / 8e-18 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009005 [exp] 194 / 4e-56 AT3G25510 323 / 3e-92 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10023272 [exp] 182 / 4e-52 AT5G36930 423 / 4e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029860 [exp] 179 / 6e-51 AT5G36930 395 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10038533 [exp] 169 / 2e-47 AT1G27170 386 / 7e-114 transmembrane receptors;ATP binding (.1.2) Lus10026961 [exp] 168 / 3e-47 AT5G36930 420 / 2e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10020534 [exp] 167 / 9e-47 AT5G36930 414 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 167 / 1e-46 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10022707 [exp] 161 / 1e-46 AT5G36930 280 / 5e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 166 / 3e-46 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001600 [exp] 121 / 6e-31 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 120 / 1e-30 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 117 / 1e-29 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G084333 [exp] 115 / 3e-29 AT5G36930 347 / 2e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 115 / 8e-29 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 114 / 2e-28 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 108 / 1e-26 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.007G099700 [exp] 108 / 2e-26 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 106 / 1e-25 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G307300 [exp] 104 / 5e-25 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10035406 pacid=23170551 polypeptide=Lus10035406 locus=Lus10035406.g ID=Lus10035406.BGIv1.0 annot-version=v1.0 ATGGGGAGGGGAGTTCTCAACTGTGAGGCATTTGGCTTTTGGCGGAGGCTTTATATCACGGATGTACCGGCAGAAGACCAGCTGAAAGCTATCGATTTAT GGAACTGTAATGGCTTAGGAAAAAGTCCTGACTTGCCTCAGTCTGAAGAAGATGTTGAGTTTTTAAACTTAGATGCTGATGTGGATAACATAAAGAAACT GCTACAGTCAGACCCTCAAGTTGTGAAAGTTATAGGTATATGTGGTATGGGTGGTGTTGGCAAGACAACCATAGCAAAGGCTGTATACAATGAGGTTTGT GGACAATTCGATAGGTATTGCTTCGTAGAAAATGTGCAACAAACAGTACTCTCGAAGACGGATGGTATTGTGAGTTTGCAGAGGAAGATCATGTCTTCGA TGTTGCGTGGTGATTTTGAGGTTGAAGATGCCAATCAAGGAATTGACATCATAACAAGTAATATAAGCAGGCACAAGGTCCTTATCATTCTAACTGACGT ACACCAAAGGTTTAGTCTTGCGCAAGTTCTGGGGGAACTGGAGGGTTATCAGTCAGGAAGTAGATTTGTTATCACGACAAGATATCAAAGAGCTATGAGA TTCTACGCACGGTGCGAGTTTCACTTAGCTCAACATATGAATGAAAATTATTCATTGCAACTTTTTAACAAGCATGCCTTTGGAACGAATCATCCTCCGA ATATAGATCCGCGGAATTTTGTAAAGAGTTTTACAAGGTCATCCGTTGATGATAACGGTTGTTGGATCTCTCTTATTCGGCAGAGGTGA
AA sequence Show only first row Show all	>Lus10035406 pacid=23170551 polypeptide=Lus10035406 locus=Lus10035406.g ID=Lus10035406.BGIv1.0 annot-version=v1.0 MGRGVLNCEAFGFWRRLYITDVPAEDQLKAIDLWNCNGLGKSPDLPQSEEDVEFLNLDADVDNIKKLLQSDPQVVKVIGICGMGGVGKTTIAKAVYNEVC GQFDRYCFVENVQQTVLSKTDGIVSLQRKIMSSMLRGDFEVEDANQGIDIITSNISRHKVLIILTDVHQRFSLAQVLGELEGYQSGSRFVITTRYQRAMR FYARCEFHLAQHMNENYSLQLFNKHAFGTNHPPNIDPRNFVKSFTRSSVDDNGCWISLIRQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27170			transmembrane receptors;ATP bi...		Lus10035406 [exp]	0	1

Compare expression of checked genes

Lus10035406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.