Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 434 / 1e-153 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23430 433 / 4e-153 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 350 / 2e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 336 / 1e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 271 / 3e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 261 / 3e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 229 / 1e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 121 / 1e-31 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G54190 119 / 3e-30 PORA protochlorophyllide oxidoreductase A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035480 [exp] 650 / 0 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031100 [exp] 595 / 0 AT4G11410 409 / 1e-144 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 489 / 4e-175 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 488 / 7e-175 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 468 / 1e-166 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 456 / 3e-162 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024649 [exp] 452 / 1e-160 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 451 / 6e-160 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 437 / 8e-155 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 457 / 1e-162 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 422 / 9e-149 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 421 / 2e-148 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 406 / 2e-142 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 396 / 5e-138 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 381 / 2e-132 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 355 / 2e-122 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G087800 [exp] 271 / 5e-89 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 261 / 3e-85 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G081102 [exp] 261 / 3e-85 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035479 pacid=23170666 polypeptide=Lus10035479 locus=Lus10035479.g ID=Lus10035479.BGIv1.0 annot-version=v1.0 ATGCGCCTCATTCCAGATATCCATTCCATTCAAGCTTACTGGGAAAACAGAGAAACAAGCTTACTAACTCCTACTCCATTGGGAATTTCTACTCAGTCTA GTACCACAAAAGAAAAGATGTGGATCTTTGGATGGAAAGGACCAAGTGGGTTCTCAGCTCGATCCACTGCTGAAGAAGTTACTCAAGGAATCGACGCTAC TGGCCTCACCGCCATTGTTACAGGAGCTACAAGTGGAATTGGAGTGGATACAGCAAGAGTGCTGGCTCTCAGGGGAGCTCATGTTGTTATGGCCGTCAGA AACGTACAAGCTGGCAATCAACTCAAACAATCCATCCTCAAGGAAACCCCTGCTGCTAAGATTGATGTCATGCACTTGAATCTCAGTTCCATGGCTTCCG TCAGGAAATTTGCTTCTCATTACATCTCTTCCGCCCTTCCACTCAACATTCTCATTAACAATGCAGGCATCATGGCGCCTCCTTTCACTCTTTCCCCGGA TAACATCGAACTCCAGTTTGCAACTAACCATATTGGGCATTTCCTTCTGACGCATCTTCTGCTGGACACGATGAAGAAGACAGCTCGTGAGAGCAATCGA GAGGGGAGGATTGTGAATGTATCATCTGGAGGCCACCAATTCGCCTATGCAGAAGGCATTCGATTCGACAAGATCAATAACGAAGCAGAGTACAACTGCT ACCGTGCTTATGGACAGTCCAAGGTTGCTAACATCCTCCATGCCAAGGAGCTAGCAAGGCGCCTTAAGGAAGAAGGGGTGAACATAACTGCTAATTCACT TCATCCCGGCGAGATTGCGACCAACCTTGCTCGGGACAATGGCCTTCTTAATGCTATTTCTAACAGCTTTGTTAAGTACTTCCTCAAAACCACAAGCCAG GGAGCGGCAACTCAACTATATGTGGCTCTGCACCCACAAGTGGAAGGGGTATCTGGGGAATACTTCAATCACAATAACATATCGAAACCAGGAACAGCTC CTGCTCAAGATGAAGTGTTGGCCAAAAATCTGTGGGATTTCACCATGAATATCATCACTACTTAG
AA sequence Show only first row Show all	>Lus10035479 pacid=23170666 polypeptide=Lus10035479 locus=Lus10035479.g ID=Lus10035479.BGIv1.0 annot-version=v1.0 MRLIPDIHSIQAYWENRETSLLTPTPLGISTQSSTTKEKMWIFGWKGPSGFSARSTAEEVTQGIDATGLTAIVTGATSGIGVDTARVLALRGAHVVMAVR NVQAGNQLKQSILKETPAAKIDVMHLNLSSMASVRKFASHYISSALPLNILINNAGIMAPPFTLSPDNIELQFATNHIGHFLLTHLLLDTMKKTARESNR EGRIVNVSSGGHQFAYAEGIRFDKINNEAEYNCYRAYGQSKVANILHAKELARRLKEEGVNITANSLHPGEIATNLARDNGLLNAISNSFVKYFLKTTSQ GAATQLYVALHPQVEGVSGEYFNHNNISKPGTAPAQDEVLAKNLWDFTMNIITT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035479 [exp]	0	1
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10035480 [exp]	1.0	0.9983
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	4.6	0.9664
AT5G12340			unknown protein		Lus10036031 [exp]	5.3	0.9606
					Lus10027919 [exp]	5.5	0.9769
					Lus10020455 [exp]	6.3	0.9714
					Lus10000859 [exp]	6.5	0.9790
					Lus10020728 [exp]	8.0	0.9597
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	8.1	0.9609
AT2G14095			unknown protein		Lus10001300 [exp]	8.1	0.9702
AT3G23770			O-Glycosyl hydrolases family 1...		Lus10008881 [exp]	10.5	0.9486

Compare expression of checked genes

Lus10035479 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.