Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23430 477 / 5e-171 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 474 / 6e-170 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 469 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G37540 373 / 5e-130 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 360 / 6e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 275 / 2e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 272 / 4e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G64590 235 / 1e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G27760 124 / 1e-32 FEY3, FEY FOREVER YOUNG, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53090 116 / 1e-29 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031101 [exp] 644 / 0 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10024647 [exp] 546 / 0 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032282 [exp] 524 / 0 AT4G23430 459 / 8e-164 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10032281 [exp] 512 / 0 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024649 [exp] 508 / 0 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10024648 [exp] 507 / 0 AT4G23430 447 / 2e-159 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035480 [exp] 488 / 3e-175 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 488 / 1e-174 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 469 / 5e-168 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G128700 [exp] 499 / 5e-180 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 461 / 9e-165 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 454 / 7e-162 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 432 / 3e-153 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 432 / 1e-152 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143800 [exp] 421 / 3e-149 AT4G23420 427 / 3e-151 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 370 / 1e-128 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 272 / 5e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 272 / 5e-90 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 265 / 2e-87 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035481 pacid=23170583 polypeptide=Lus10035481 locus=Lus10035481.g ID=Lus10035481.BGIv1.0 annot-version=v1.0 ATGTGGATCTTCGGATGGAAAGGTGCATCTGGCTTCTCAGGTCGTTCCACTGCTGAGGAAGTTACTAATGGAATCGACGCAACTGGCCTTACTGCAATCG TCACAGGAGCGTCGAGCGGAATTGGTGTCGAGACATCACGGATCCTGGCTCTGCGTGGTGCTCAAGTGGTTATGGCAGTAAGGAATGTTGAAGCTGGCAA GAGCGTTCAGGAAGCAATCCTCAAGGAAATTCCCACTGCTAAGGTTGATGTTATGGAGCTGGATCTCAGTTCAATGGCATCAGTCAAAAAATTCGCATCC GAATATGTTTCTTCTGGCCTTCCACTGAATCTCCTAATTAACAATGCAGGCATCATGATGATCCCGTTCAAACTCTCTGCGGATAAGATAGAGTTACAGT TTGCTACAAACCATGTCGGACATTTCCTCTTGACACATCTTTTGTTGGACACAATGAAGGCTACTGCTCGAGAGAGTAATCAAGAAGGAAGAATCGTTAA TCTATCATCAGAAGGTCACCGTTTGACGTACACGGAAGGAATTCGTTTTGACAAGATCAACAATGAAGCAGAGTACAACAAGATGCGTGCCTATGGGCAG TCAAAGCTTGCTAACATCCTTCATGCTAATGAGCTTGCAAGGCGTCTCAAGGAAGAAGGAATCAATATAACTGCCAACTCGCTTCATCCTGGAGCAATTG CAACGAATCTCGCCCGCTATCATGGTGTTCTCAATGCCATTACAAATACCATTGGAAAATATGTGATAAAAAATGTTCAACAGGGAGCTGCAACTACATG CTACGTTGCACTGCATCCACAAGTGAAAGGGGTGACGGGGGAATACTTCTCTGACAGCAATCTATACAAACCACACCCTCAGGCAACGGATGAAGAATTG GCAAAGAAGCTGTGGGATTTCAGCTTGGAGTTGACCAACCCCTTCTGTTAA
AA sequence Show only first row Show all	>Lus10035481 pacid=23170583 polypeptide=Lus10035481 locus=Lus10035481.g ID=Lus10035481.BGIv1.0 annot-version=v1.0 MWIFGWKGASGFSGRSTAEEVTNGIDATGLTAIVTGASSGIGVETSRILALRGAQVVMAVRNVEAGKSVQEAILKEIPTAKVDVMELDLSSMASVKKFAS EYVSSGLPLNLLINNAGIMMIPFKLSADKIELQFATNHVGHFLLTHLLLDTMKATARESNQEGRIVNLSSEGHRLTYTEGIRFDKINNEAEYNKMRAYGQ SKLANILHANELARRLKEEGINITANSLHPGAIATNLARYHGVLNAITNTIGKYVIKNVQQGAATTCYVALHPQVKGVTGEYFSDSNLYKPHPQATDEEL AKKLWDFSLELTNPFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	0	1
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	1.0	0.9126
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	2.0	0.8992
AT4G36860		DAR1	DA1-RELATED PROTEIN 1, LIM dom...		Lus10022486 [exp]	4.4	0.8710
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	5.2	0.8792
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	5.9	0.8901
AT2G38610			RNA-binding KH domain-containi...		Lus10034443 [exp]	6.5	0.8855
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10032636 [exp]	6.6	0.8908
AT1G07080			Thioredoxin superfamily protei...		Lus10026384 [exp]	7.4	0.8788
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	9.3	0.8965
AT2G38900			Serine protease inhibitor, pot...		Lus10035626 [exp]	15.2	0.8789

Compare expression of checked genes

Lus10035481 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.