Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38090 290 / 4e-98 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G01200 232 / 7e-76 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 228 / 1e-73 MYB Homeodomain-like transcriptional regulator (.1) AT5G05790 210 / 4e-67 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 201 / 2e-63 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT1G49010 161 / 1e-47 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G08520 156 / 6e-46 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 143 / 7e-42 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 135 / 3e-37 MYB Homeodomain-like transcriptional regulator (.1) AT5G47390 120 / 2e-31 MYB myb-like transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027781 [exp] 447 / 1e-160 AT2G38090 208 / 2e-66 Duplicated homeodomain-like superfamily protein (.1) Lus10018209 [exp] 267 / 6e-89 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10040696 [exp] 264 / 9e-88 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10014837 [exp] 202 / 4e-64 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10009884 [exp] 203 / 5e-64 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 188 / 1e-58 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2) Lus10036413 [exp] 159 / 2e-47 AT5G04760 234 / 3e-78 Duplicated homeodomain-like superfamily protein (.1) Lus10013447 [exp] 160 / 4e-47 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10041001 [exp] 159 / 1e-46 AT5G08520 354 / 4e-123 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G112300 [exp] 342 / 2e-118 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 338 / 7e-117 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 279 / 1e-93 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 269 / 1e-89 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.010G193000 [exp] 228 / 9e-74 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1) Potri.008G064200 [exp] 210 / 6e-67 AT5G05790 267 / 3e-89 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 170 / 3e-51 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 166 / 9e-50 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.007G076200 [exp] 166 / 2e-49 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 153 / 1e-45 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10035518 pacid=23147384 polypeptide=Lus10035518 locus=Lus10035518.g ID=Lus10035518.BGIv1.0 annot-version=v1.0 ATGGACAGAGGGATGGAAATCCTGTCGCCGGCGTCCTACCTGCAGAACTCAGGGTGGCTGTTCCAGGAGAGCAAGAGGCCGAAATGGACGAGCGAAGAGA ACAAGAGGTTTGAGAATGCGTTGGCGCTTTACGACAGGGACACTCCCGATCGGTGGGGGGCAGGTGTGGGGGTGGGGCGGCGGAAAGTTGCGGCGTTGAT CCCTGGGAAAACAGTCGGCGACGTGATCAAACAGTACAGGGAGCTTGAAGAAGACGTCAGCGACATAGAGGCTGGACTTATCCCTGTGCCTGCTGGATAC GACGTCGGTTCTGCTGATTCTTTTACTTTGGAGTTGGTCAATAGTCATAGCTACGATGAGCTTAAGGAATTCTACAGTCCTGGTGGCAAAAGGACTCGTG CTTGTGAGCAGGAACGCAAGAAAGGTGTCCCTTGGACTGAAGAAGAACATAGGCAGTTCCTGCTGGGGCTAGAGAAGTATGGCAAGGGAGACTGGAGGAA CATATCTCGAAACTTTGTGATGACGAGGACGCCAACACAGGTAGCTAGCCATGCTCAGAAGTACTTCATCAGGCAGAGCACAGGTGGGAAAGACAAGAAG AGATCAAGCATCCATGATATCACCACTGTCAATCCTCCTACAGACTCCAAGCAGCAGGTGCATTCTTCCCCAGATCACTCAACAACCACCATGGATACGA AACTCGACACGAATGTGATGATGGGTGGAGCAAATGTATGCGGTATGATGTCGTCAAGCTCGCCTTATGGACTGCAGCTGCAGGAACAGAAGAGCCTGAT TCTGATGGGAGGACCATCCAGCTATGGTTTGGTCTATCAGCCGATGCAATCAATGCAGAACCAGTAG
AA sequence Show only first row Show all	>Lus10035518 pacid=23147384 polypeptide=Lus10035518 locus=Lus10035518.g ID=Lus10035518.BGIv1.0 annot-version=v1.0 MDRGMEILSPASYLQNSGWLFQESKRPKWTSEENKRFENALALYDRDTPDRWGAGVGVGRRKVAALIPGKTVGDVIKQYRELEEDVSDIEAGLIPVPAGY DVGSADSFTLELVNSHSYDELKEFYSPGGKRTRACEQERKKGVPWTEEEHRQFLLGLEKYGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQSTGGKDKK RSSIHDITTVNPPTDSKQQVHSSPDHSTTTMDTKLDTNVMMGGANVCGMMSSSSPYGLQLQEQKSLILMGGPSSYGLVYQPMQSMQNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10035518 [exp]	0	1
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	1.0	0.8886
AT5G55960			unknown protein		Lus10022565 [exp]	1.4	0.8623
AT4G33625			unknown protein		Lus10007070 [exp]	3.5	0.8488
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	6.7	0.8041
AT1G14020			O-fucosyltransferase family pr...		Lus10037144 [exp]	7.2	0.8058
AT4G28760			Protein of unknown function (D...		Lus10011911 [exp]	8.0	0.7831
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10025823 [exp]	8.4	0.7976
AT2G18950		ATHPT, VTE2, TP...	VITAMIN E 2, homogentisate phy...		Lus10006961 [exp]	11.5	0.7979
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10002678 [exp]	15.3	0.7597
AT5G62890			Xanthine/uracil permease famil...		Lus10042138 [exp]	15.5	0.7818

Compare expression of checked genes

Lus10035518 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.